View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11721_low_5 (Length: 815)
Name: NF11721_low_5
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 692; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 692; E-Value: 0
Query Start/End: Original strand, 1 - 800
Target Start/End: Complemental strand, 4487994 - 4487196
Alignment:
| Q |
1 |
tttgattatcatcctcctccctaccaactcaatactaggccattctgtcatgctgtgttaaatcacataggagctctcaaataagattataattagcaat |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||| || |||||| ||| |||||| ||||||| ||||||||||||||||| |||||||||||||| |
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| T |
4487994 |
tttgattatcatcctcctccctatcaactcaatactagtcctttctgtgatgatgtgttcaatcacagaggagctctcaaataagtttataattagcaat |
4487895 |
T |
|
| Q |
101 |
tcggaatatttaacaacattcgctaaatgcaactttttgagaataaatatgtttttgctatattgatttggaattgttgtttatatgtggctaaacaatg |
200 |
Q |
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| ||||||||||| ||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4487894 |
ttggaatatttaataacttgcactaaatgcaactttttgagaataaatatgtttttgctatattgatttggaattgttgtttatatgtggctaaacaatg |
4487795 |
T |
|
| Q |
201 |
atggaagacttatgatgctgttgttggggacatgaccataatagaggaaagattgccgtatgtggattttacagtgccatatgtagaatcaggattgtca |
300 |
Q |
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| T |
4487794 |
atggaagacttatgatgctgttgttggggacatgaccataatagaggaaaggttgccgtatgtggattttacagtgccatatgcagaatcaggattgtca |
4487695 |
T |
|
| Q |
301 |
atgatagttccgatgaagcctggagagtcagcatggatgtttatgaagccatttaccttggaattgtggctggttacaggtgcaatcttgatttacacaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4487694 |
atgatagttccgatgaagcctggagagtcagcatggatgtttatgaagccatttaccttggaattatggctggttacaggtgcaatcttgatttacacaa |
4487595 |
T |
|
| Q |
401 |
tgttagttgtttggtatctcgagagagaaccgaacccagagtttcagctcagcacagctctttggtttaccttctcctctttgttcttcgctcatagtga |
500 |
Q |
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| T |
4487594 |
tgttagttgtttggtatctcgagagagaaccgaacccagagtttcagctcagtacagctctttggtttaccttctcctctttgttcttcgctcatagtga |
4487495 |
T |
|
| Q |
501 |
gtatcaannnnnnnnnatcattgggaatcaaacttggtactccgcggtttacaacactcgcacacactgcacatgaaccactttcgttagaccccaatgg |
600 |
Q |
| |
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| T |
4487494 |
gtatcaa-ttttttttatcattgggaatcaaacttggtactccgcggtttacaacactcgcacacactgcacatgaaccactttcgttagaccccaatgg |
4487396 |
T |
|
| Q |
601 |
tccatatcaatctcaaacttccttacaattttgatgcgaaataaaattatgcaaaacagacaaacctgttacagaaagctcctaatttgaaacattgaat |
700 |
Q |
| |
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| T |
4487395 |
tccatatcaatctcaaacttccttacagttttgatgcgaaataaaattatgcaaaacagacaaacctgttacagaaagctcctaatttgaaacattgaat |
4487296 |
T |
|
| Q |
701 |
ttgaactcatctaatgtctatgattttattttgcaggggcagaaatgtacagcaacttaactcgagttgtgatggtctcatggctctttcttgtattgat |
800 |
Q |
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| T |
4487295 |
ttgaactcatctaatgtctatgattttattttgcaggggcagaaatgcacagcaacttaactcgagttgtgatggtctcatggctctttcttgtattgat |
4487196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 161 - 507
Target Start/End: Complemental strand, 4482855 - 4482491
Alignment:
| Q |
161 |
tattgatttggaattgttgtttatatgtggctaaacaatgatggaagacttatgatgctgttgttggggacatgaccataatagaggaaagattgccgta |
260 |
Q |
| |
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|||||||| ||| || |||||||| | ||| ||||||||||||||||||||| || ||| |||||||||||| | |||||||||||||||||||| ||| |
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| T |
4482855 |
tattgattgggactttttgtttatgtttggttaaacaatgatggaagacttacgacgcttttgttggggacacggccataatagaggaaagattgaggta |
4482756 |
T |
|
| Q |
261 |
tgtggattttacagtgccatatgtagaatcaggattgtcaatgatagttccgatgaagcctggagagtcagcatggatgtttatgaagccatttaccttg |
360 |
Q |
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| T |
4482755 |
tgtggattttacattgccatatgcagaatcaggattgtcgatgatagttccattgaagacggaagattcagcatggatgtttatgaagccatttacctgg |
4482656 |
T |
|
| Q |
361 |
gaattgtggctggttacaggtgcaatcttgatttacacaatgttagttgtttggtatctcgagagagaaccgaacccagagttt---------------- |
444 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||| |||||||||||| |
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| T |
4482655 |
gaattgtggctgggtacaggtgcaatcttgatttacacaatgtgtgttgtttggtatctagagagagtacccaacccagagtttcatggaaactggaagc |
4482556 |
T |
|
| Q |
445 |
--cagctcagcacagctctttggtttaccttctcctctttgttcttcgctcatagtgagtatcaa |
507 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||| | ||||| |||||||||||||||||| |
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| T |
4482555 |
tccagctcagcacagctctttggtttaccttctcttctctcttctttgctcatagtgagtatcaa |
4482491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 749 - 800
Target Start/End: Complemental strand, 4482352 - 4482301
Alignment:
| Q |
749 |
acagcaacttaactcgagttgtgatggtctcatggctctttcttgtattgat |
800 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4482352 |
acagcagcttaactcgagtggtgatggtctcatggctctttcttgtattgat |
4482301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 6e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 206 - 446
Target Start/End: Original strand, 34606351 - 34606591
Alignment:
| Q |
206 |
agacttatgatgctgttgttggggacatgaccataatagaggaaagattgccgtatgtggattttacagtgccatatgtagaatcaggattgtcaatgat |
305 |
Q |
| |
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|||||||||| | ||||||||| |||||||||||| | | || ||||||| ||||| |||||||| |||||||||| ||| ||||||||||| ||||| |
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| T |
34606351 |
agacttatgacggtgttgttggcgacatgaccatactggcagagagattgcaatatgtagattttactgtgccatatgcagagtcaggattgtcgatgat |
34606450 |
T |
|
| Q |
306 |
agttccgatgaagcctggagagtcagcatggatgtttatgaagccatttaccttggaattgtggctggttacaggtgcaatcttgatttacacaatgtta |
405 |
Q |
| |
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|||| || |||| ||| ||| ||||||||||||||||||||||| || |||| | || ||||| |||| || |||| ||||||||||| |||||| || |
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| T |
34606451 |
agttacggagaagtctgaagaatcagcatggatgtttatgaagcccttcacctggcaaatgtgggtggtaactggtgtcatcttgatttatacaatggta |
34606550 |
T |
|
| Q |
406 |
gttgtttggtatctcgagagagaaccgaacccagagtttca |
446 |
Q |
| |
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|| || ||||| || ||||| ||| || ||||||||||| |
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| T |
34606551 |
gtagtgtggtacctggagagggaagataatccagagtttca |
34606591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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