View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11721_low_51 (Length: 353)
Name: NF11721_low_51
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_low_51 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 7 - 334
Target Start/End: Original strand, 28283274 - 28283617
Alignment:
| Q |
7 |
gcaatttggcataacattgttctcggattctgaattgatttcgtctattatccatgcgttgtcttcttaatatcaacaaacattttacttttggtggaga |
106 |
Q |
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| T |
28283274 |
gcaatttggcataacattgttctcggattctgaattgatttcgtctattatccatgcgttgtcttcttaatatcaacaaacattttacttttggtggaga |
28283373 |
T |
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| Q |
107 |
ttatgaa-------------tgtgttgtcttcaacaaactgtatattggatatattgccatgttgtctcttaaacaaacaacatagtttttaaaacataa |
193 |
Q |
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| T |
28283374 |
ttatgaaatggtattatgaatgtgttgtcttcaacaaactgtatattggatatattgccatgtcgtctcttaaacaatcaacatagtttttaaaacataa |
28283473 |
T |
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| Q |
194 |
c---gtacaataagaaaagggatccattgactctaggaataattctcgagttactccaaatccctacaaccagttttgttttaatctaatggtcttcatt |
290 |
Q |
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| T |
28283474 |
caacgtacaataagaaaagggatccattgactctaggaataattctcgagttactccaaatccctacaaccagttttgttttaatctaatggtcttcatt |
28283573 |
T |
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| Q |
291 |
agttacaaattaatctaactagttgtttggatcaaaatctccct |
334 |
Q |
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| T |
28283574 |
agttacaaattaatctaactagttgtttggatcaaaatctccct |
28283617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 28290947 - 28291001
Alignment:
| Q |
7 |
gcaatttggcataacattgttctcggattctgaattgatttcgtctattatccat |
61 |
Q |
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| T |
28290947 |
gcaatttggcataacgatgttctcggatcctgaatttatttcgtctattatccat |
28291001 |
T |
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