View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11721_low_52 (Length: 348)
Name: NF11721_low_52
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_low_52 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 7 - 348
Target Start/End: Original strand, 28282721 - 28283062
Alignment:
| Q |
7 |
gtgagatgaaaaatgagagaagaaaaaagaaattgtgatataatctgtacaacattcaaaatttacattttgcttatattttgtttcaaagaataccaaa |
106 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28282721 |
gtgatatgaaaaatgagagaagaaaaaggaaattgtgatataatctgtacaacattcaaaatttacattttgcttatattctgtttcaaagaataccaaa |
28282820 |
T |
|
| Q |
107 |
agcaaagacggtggtagcctcgccctttggtcagagatgtcattgcatctctttatcactaatactgttccactagtatattgaattctaatatcttgct |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28282821 |
agcaaagacggtggtagcctcgccctttggtcagagatgtcattgcatctctttatcactaatactgttccactagtatattgaattctaatatcttgct |
28282920 |
T |
|
| Q |
207 |
tagctttattaaggactcttgaagcaagttgaaacttagatcttatacattataagatctaaatgtatattcacctgatcagttttaattttatcaatct |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28282921 |
tagctttattaaggactcttgaagcaagttgaaacttagatcttatacattataagatctaaatgtatattcacctgatcagttttaattttatcaatct |
28283020 |
T |
|
| Q |
307 |
aagcagtttttcattcttactttttgttgtgtttgtttgatt |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28283021 |
aagcagtttttcattcttactttttgttgtgtttgtttgatt |
28283062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 206 - 326
Target Start/End: Original strand, 28304776 - 28304897
Alignment:
| Q |
206 |
ttagctttattaaggactcttgaagcaagttgaaacttagatcttatacattataagatctaaatgt-atattcacctgatcagttttaattttatcaat |
304 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||| | |||||| |||| ||||| | ||||||| | | ||| ||||||||||| ||||||||| |
|
|
| T |
28304776 |
ttagctttattaatgactcttgaagcgagttgaaactcatatcttacacatcataaggtgtaaatgtaaaaaccacttgatcagttttccttttatcaag |
28304875 |
T |
|
| Q |
305 |
ctaagcagtttttcattcttac |
326 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
28304876 |
ctaagcaatttttcattcttac |
28304897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University