View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11721_low_57 (Length: 340)
Name: NF11721_low_57
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_low_57 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 31059396 - 31059725
Alignment:
| Q |
1 |
gattctctctttcaatcttctctactgcttcatcaccgtccattcccacaacctctggccactcattcttccctaaagtaaaataatcattaaaattcaa |
100 |
Q |
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| T |
31059396 |
gattctctctttcaatcttctctactgcttcatcaccgtccattcccacaacctctggccactcattcttccctaaagtaaaataatcattaaaattcaa |
31059495 |
T |
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| Q |
101 |
tattagtaagca--tgtacacataatacaattatatctatagattatagaattcaatccctatagtacttgcattcaatcaacttatattaaaaaataca |
198 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31059496 |
tattagtaagcacatgtacacataatacaattatatctatagattatagaattcaatccctatagtacttgcattcaatcaacttatattaaaaaataca |
31059595 |
T |
|
| Q |
199 |
gcatattatatgaatgattacctaaacatcgaccttcatccctcctcattttgctttatatgttgtttttcactaaataccttatatagagcaggctcgt |
298 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
31059596 |
gcatattatatgtacgattacctaaacatcgaccttcatccctcctcattctgctttatatgttgcttttcactcaataccttatatagagcaggctcgt |
31059695 |
T |
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| Q |
299 |
gttatatataatatattttaatttgggtct |
328 |
Q |
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|||||| ||||||| ||||||||||||||| |
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| T |
31059696 |
gttataaataatattttttaatttgggtct |
31059725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 152 - 328
Target Start/End: Original strand, 31068184 - 31068363
Alignment:
| Q |
152 |
caatccctatagtacttgcattcaatcaacttatattaaaaaatacagcatattatatgaatgattacctaaacatcgaccttcatccctcctcattttg |
251 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| | || || || |
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| T |
31068184 |
caatccctatagtacttgcattcaatcaacttaaattaaaaaatacagcatattatatgtatgattacctaaacatcgaccttccattttgct-tttctg |
31068282 |
T |
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| Q |
252 |
ctttatatgttgtttttcactaaataccttatatagagcaggctcgtgt----tatatataatatattttaatttgggtct |
328 |
Q |
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|||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
31068283 |
ctttatatgttgcttttcactcaataccttatatagagcaggctcgtgttatatatatataatataatttaatttgggtct |
31068363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 31068073 - 31068185
Alignment:
| Q |
2 |
attctctctttcaatcttctctactgcttcatcaccgtccattcccacaacctctggccactcattcttccctaaagtaaaataatcattaaaattcaat |
101 |
Q |
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|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||| |
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| T |
31068073 |
attctctctttctatcttctcagctgcttcatcaccgtccattcccacaacctctggccatttattcttccctaaagta----aatcattaaaattcaat |
31068168 |
T |
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| Q |
102 |
attagtaagcatgtaca |
118 |
Q |
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||||||||||||||||| |
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| T |
31068169 |
attagtaagcatgtaca |
31068185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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