View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11721_low_58 (Length: 331)
Name: NF11721_low_58
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_low_58 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 18861038 - 18860729
Alignment:
| Q |
1 |
aagacacatgttcaatggtgctagtgaatatatcaatcaagtagatatgcattttatgtctttgtctaaagaaatactaacatcttatgtgtataatttt |
100 |
Q |
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| T |
18861038 |
aagacacatgttcaatggtgctagtgaatatatcaatcaagtagatatgcattttatgtctttgtctaaagaaatactaacatcttatgtgtataatttt |
18860939 |
T |
|
| Q |
101 |
cataggttttacaaatgaccaaaaagacaaaacttgtttagtgggggaatcatcccatgattatctagcttaattaatcataaaatccacccttgttaat |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
18860938 |
cataggttttgcaaatgaccaaaaagacaaaacttgtttagtgggggaatcatcccatgattatccagcttaattaatcataaaatgcacccttgttaat |
18860839 |
T |
|
| Q |
201 |
taacattttgtgacattttacttgtacttgttaaaaatcaattaactatatcaaactaaaaatactttaattagattttannnnnnnatatgtgggtatt |
300 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
18860838 |
taacattttgtgacattttactagtacttgttaaaaatcaattaactatatcaaactaaaaatactttaattagatttt--ttttttatatgtgggtatt |
18860741 |
T |
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| Q |
301 |
atgggtacatcc |
312 |
Q |
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|||||||||||| |
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| T |
18860740 |
atgggtacatcc |
18860729 |
T |
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