View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11721_low_62 (Length: 298)
Name: NF11721_low_62
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_low_62 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-147; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 6145886 - 6145604
Alignment:
| Q |
1 |
aaagaaagtgtggtcaaaactagttgattattatcctgagatatgcgtatctctcacaaaaagtatgatgtattcattagttttaggggagaggatacac |
100 |
Q |
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| T |
6145886 |
aaagaaagtgtggtcaaaactagttgattattatcctgagatatgcgtatctctcacaaaaagtatgatgtattcattagttttaggggagaggatacac |
6145787 |
T |
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| Q |
101 |
gtacaaacttcactgcccagcttcatcgagctcttaccgatagaagtatcgaatcatacattgattacaatcttgttaagggagatgaagttggacctgc |
200 |
Q |
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| T |
6145786 |
gtacaaacttcactgcccagcttcatcgagctcttaccgatagaagtatcgaatcatacattgattatagtcttgttaaaggagatgaggttggacctgc |
6145687 |
T |
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| Q |
201 |
tcttgccgaagcaatcaaagactcgcatatgtctattgtagttttctcaaaagagtatgcaacttcaaagtggtgtttggatg |
283 |
Q |
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| T |
6145686 |
tcttgccgaagcaatcaaagactcgcatatgtctattgtagttttctcaaaagactatgcaacttcaaagtggtgtttggatg |
6145604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 36 - 283
Target Start/End: Complemental strand, 6188885 - 6188638
Alignment:
| Q |
36 |
ctgagatatgcgtatctctcacaaaaagtatgatgtattcattagttttaggggagaggatacacgtacaaacttcactgcccagcttcatcgagctctt |
135 |
Q |
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| T |
6188885 |
ctgagatatgcgtatctctcacaaaaagtacgatgtattcattagctttaggggagaggatacacgtacaaacttcactgcccagcttcatcaagctctt |
6188786 |
T |
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| Q |
136 |
accgatagaagtatcgaatcatacattgattacaatcttgttaagggagatgaagttggacctgctcttgccgaagcaatcaaagactcgcatatgtcta |
235 |
Q |
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| T |
6188785 |
agcgatagaagtatcgaatcatacattgattacaatcttgttaaaggtgatgaggttggacctgctcttaccaaagcaattgatgactcacatatgtctc |
6188686 |
T |
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| Q |
236 |
ttgtagttttctcaaaagagtatgcaacttcaaagtggtgtttggatg |
283 |
Q |
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| T |
6188685 |
ttgtagttttctcaaaagactatgcaacttcaaagtggtgcttggatg |
6188638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 41 - 283
Target Start/End: Complemental strand, 6180106 - 6179864
Alignment:
| Q |
41 |
atatgcgtatctctcacaaaaagtatgatgtattcattagttttaggggagaggatacacgtacaaacttcactgcccagcttcatcgagctcttaccga |
140 |
Q |
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| T |
6180106 |
atatgcgtatctctcacaaaaagtatgatttattcattagctttaggggagaggatacacgtacaaacttcactgcccagcttcatcgagctcttaccga |
6180007 |
T |
|
| Q |
141 |
tagaagtatcgaatcatacattgattacaatcttgttaagggagatgaagttggacctgctcttgccgaagcaatcaaagactcgcatatgtctattgta |
240 |
Q |
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| T |
6180006 |
tagtagtatcgaatcatacatcgattatagtctcgttaagggtgatgaagttggacctgctcttgctaaagcaatccaagattcacatatgtctcttgta |
6179907 |
T |
|
| Q |
241 |
gttttctcaaaagagtatgcaacttcaaagtggtgtttggatg |
283 |
Q |
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| T |
6179906 |
gttttctcagaaaactatgcaacctcaaagtggtgcttggatg |
6179864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 123
Target Start/End: Complemental strand, 6098126 - 6098054
Alignment:
| Q |
51 |
ctctcacaaaaagtatgatgtattcattagttttaggggagaggatacacgtacaaacttcactgcccagctt |
123 |
Q |
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| T |
6098126 |
ctctcacaaaaagtatgatgtattcgttagcttcaggggagaggatacacgctcaaccttcactgcacagctt |
6098054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 275
Target Start/End: Complemental strand, 6047361 - 6047241
Alignment:
| Q |
155 |
catacattgattacaatcttgttaagggagatgaagttggacctgctcttgccgaagcaatcaaagactcgcatatgtctattgtagttttctcaaaaga |
254 |
Q |
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| T |
6047361 |
catacattgatgataatcttgtgaagggagatgaaattggtgaagcacttgctgaagcaatccaagactcacgcatatctcttgttgtattctccaaaaa |
6047262 |
T |
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| Q |
255 |
gtatgcaacttcaaagtggtg |
275 |
Q |
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| T |
6047261 |
ttatgcaacctcaaagtggtg |
6047241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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