View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11721_low_63 (Length: 298)
Name: NF11721_low_63
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_low_63 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 10 - 205
Target Start/End: Complemental strand, 30893577 - 30893382
Alignment:
| Q |
10 |
gcagagaaccccgattcagaacacagctaaatccttaaacgacagacatacaaatatctggtattgaaaaccacaattcctgcagtttcaacacagtaat |
109 |
Q |
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| T |
30893577 |
gcagagaaccccgattcagaacacagctaaatccttaaacgacagacatacaaatatctggtattgaaaaccacaattcctgcagtttcaacacagtaat |
30893478 |
T |
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| Q |
110 |
cactatatatannnnnnnactcaataactaacgcatagttgatatgatgaaaaggtgaaaaaggtatcaggaataaaaaccatccccagccactgc |
205 |
Q |
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| T |
30893477 |
cactatatatatttttttactcaataactaacgcatagttgatatgatgaaaaggtgaaaaaggtatcaggaataaaaaccatccccagccactgc |
30893382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 204 - 279
Target Start/End: Complemental strand, 30893353 - 30893278
Alignment:
| Q |
204 |
gcgtgatgctctcaccattttttcaagaatgaaagaaaacaaaatcccctattggcatctattcgggttcacagag |
279 |
Q |
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| T |
30893353 |
gcgtgatgctctcaccattttttcaagaatgaaagaaaacaaaatccactattggcatctattcgggttcacagag |
30893278 |
T |
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