View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11721_low_67 (Length: 275)

Name: NF11721_low_67
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11721_low_67
NF11721_low_67
[»] chr5 (4 HSPs)
chr5 (19-270)||(15402404-15402655)
chr5 (65-185)||(15400879-15400999)
chr5 (99-198)||(41377811-41377910)
chr5 (99-195)||(43281128-43281224)
[»] chr2 (1 HSPs)
chr2 (104-195)||(42975800-42975891)
[»] chr1 (3 HSPs)
chr1 (99-198)||(50204523-50204622)
chr1 (99-150)||(43866283-43866334)
chr1 (99-195)||(33966642-33966738)
[»] chr7 (4 HSPs)
chr7 (99-195)||(32368114-32368210)
chr7 (99-195)||(23636693-23636789)
chr7 (107-195)||(46082472-46082560)
chr7 (99-191)||(19781082-19781174)
[»] chr8 (2 HSPs)
chr8 (99-242)||(36881520-36881662)
chr8 (99-131)||(1468979-1469011)
[»] chr6 (4 HSPs)
chr6 (100-195)||(25101031-25101126)
chr6 (100-195)||(6539490-6539585)
chr6 (99-137)||(18133896-18133934)
chr6 (99-137)||(23890008-23890046)
[»] chr3 (3 HSPs)
chr3 (100-195)||(7227137-7227232)
chr3 (100-194)||(50063918-50064012)
chr3 (99-135)||(43061133-43061169)
[»] chr4 (2 HSPs)
chr4 (99-192)||(10601679-10601772)
chr4 (99-193)||(55911185-55911279)


Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 15402655 - 15402404
Alignment:
Q  19 attcttttataactcacgctatcaaatggatccgacaacaactacaacaatcacgccttatctcacaaactgaggctggtttgtagtcaggatcgagtgc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15402655 attcttttataactcacgctatcaaatggatccgacaacaactacaacaatcacgccttatctcacaaactgaggctggtttgtagtcaggatcgagtgc 15402556  T
Q  119 tggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgctttgattctcctttgtttcatctg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15402555 tggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgctttgattctcctttgtttcatctg 15402456  T
Q  219 ttcttactctattttctctgttttgtttgcttgtttcctttgcttctcctct 270  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  15402455 ttcttactctattttctctgttttgtttgcttgtttcctctgcttttcctct 15402404  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 65 - 185
Target Start/End: Complemental strand, 15400999 - 15400879
Alignment:
Q  65 acaatcacgccttatctcacaaactgaggctggtttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcg 164  Q
    |||||||  |||||||||||||||||||| ||| ||||| |||| |||||||||||||||||||||  ||||| ||||| |||||  |||| ||||||||    
T  15400999 acaatcataccttatctcacaaactgaggttggcttgtaatcagaatcgagtgctggttcgtaggaccgtacgatcctacgtcccgcggcacctcaatcg 15400900  T
Q  165 tacttcgactttactcaggtt 185  Q
    |||||||||||||||||||||    
T  15400899 tacttcgactttactcaggtt 15400879  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 99 - 198
Target Start/End: Complemental strand, 41377910 - 41377811
Alignment:
Q  99 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgctttg 198  Q
    ||||||||||||| ||| ||||||| ||||||| ||||| |||||  ||||| |||| ||||||||| |||||||||||||||||||||||| |||||||    
T  41377910 ttgtagtcaggattgagagctggtttgtaggatcgtacgatcctacttcccacggcacctcaatcgtgcttcgactttactcaggttcgtttctgctttg 41377811  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 99 - 195
Target Start/End: Complemental strand, 43281224 - 43281128
Alignment:
Q  99 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgct 195  Q
    ||||||||||||||  |||||||||| |||||| ||||| | |||  ||||| |||| ||||||| | |||||||||||||||||||||||||||||    
T  43281224 ttgtagtcaggatctcgtgctggttcataggatcgtacgattctacatcccacggcacctcaatcatgcttcgactttactcaggttcgtttttgct 43281128  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 104 - 195
Target Start/End: Complemental strand, 42975891 - 42975800
Alignment:
Q  104 gtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgct 195  Q
    |||||||| |||| |||||||||||||| ||||| ||||| |||||| ||||||||||||||||||| ||||||||||| ||||||||||||    
T  42975891 gtcaggatagagttctggttcgtaggatcgtacgatcctacgtcccacggcatctcaatcgtacttcaactttactcagcttcgtttttgct 42975800  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 99 - 198
Target Start/End: Original strand, 50204523 - 50204622
Alignment:
Q  99 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgctttg 198  Q
    ||||||||||||||||||||||||||||||||| ||| | ||||| || |||  ||| ||||||||| |||||||||||||||||||| ||||| |||||    
T  50204523 ttgtagtcaggatcgagtgctggttcgtaggatcgtatgatcctacgttccacagcacctcaatcgtgcttcgactttactcaggttcattttttctttg 50204622  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 150
Target Start/End: Original strand, 43866283 - 43866334
Alignment:
Q  99 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtccca 150  Q
    |||||||||||||||||||||||||||||||||  |||| ||||||| ||||    
T  43866283 ttgtagtcaggatcgagtgctggttcgtaggatcttacgatcctatggccca 43866334  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 195
Target Start/End: Original strand, 33966642 - 33966738
Alignment:
Q  99 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgct 195  Q
    |||||| |||||||||||||||| |||||||||  |||| | ||| || ||| |||| ||||| ||| ||| ||||| ||||  |||||||||||||    
T  33966642 ttgtagccaggatcgagtgctggctcgtaggatcttacgattctacgtgccacggcacctcaaccgtgctttgacttcactccagttcgtttttgct 33966738  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 99 - 195
Target Start/End: Original strand, 32368114 - 32368210
Alignment:
Q  99 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgct 195  Q
    |||||||| || ||||||||||||||||||||| |||||  |||| |||||| ||||||||||  || ||||||||||||||| |||||||||||||    
T  32368114 ttgtagtccgggtcgagtgctggttcgtaggatcgtacgaccctacgtcccacggcatctcaactgtgcttcgactttactcatgttcgtttttgct 32368210  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 195
Target Start/End: Original strand, 23636693 - 23636789
Alignment:
Q  99 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgct 195  Q
    ||||||||||||||||||||||||||||||| | ||||  |   | |||| | |||| ||||||||| |||||||||||| |||||| |||||||||    
T  23636693 ttgtagtcaggatcgagtgctggttcgtaggttcgtacaatttgacgtccaacggcacctcaatcgtgcttcgactttacccaggtttgtttttgct 23636789  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 195
Target Start/End: Complemental strand, 46082560 - 46082472
Alignment:
Q  107 aggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgct 195  Q
    |||||| |||||||| || |||||| ||||| | |||||||||   ||| ||||| ||| |||||||||||||| | ||||||||||||    
T  46082560 aggatccagtgctggctcataggatcgtacgattctatgtccctccgcacctcaaccgtgcttcgactttactccgattcgtttttgct 46082472  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 191
Target Start/End: Complemental strand, 19781174 - 19781082
Alignment:
Q  99 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttt 191  Q
    |||||||||||| |||||||||||| |||| || ||||| |||||  ||| | | || |||||| || || |||||||||||| | |||||||    
T  19781174 ttgtagtcaggaacgagtgctggtttgtagaatagtacgatcctacatccaacgacacctcaattgtgctccgactttactcaaggtcgtttt 19781082  T

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Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 99 - 242
Target Start/End: Original strand, 36881520 - 36881662
Alignment:
Q  99 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgctttg 198  Q
    ||||| ||||||| ||||||||||| ||||||| || || ||||| |||||| |||| |||||| || |||| |||||||||||||||||||||||| ||    
T  36881520 ttgtattcaggatagagtgctggtttgtaggatcgttcgatcctacgtcccaaggcacctcaattgtgcttcaactttactcaggttcgtttttgctctg 36881619  T
Q  199 attctcctttgtttcatctgttcttactctattttctctgtttt 242  Q
     || |||| |||||  |||||| ||  ||| |||||||||||||    
T  36881620 -ttttcctctgtttgctctgtttttcttctgttttctctgtttt 36881662  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 1468979 - 1469011
Alignment:
Q  99 ttgtagtcaggatcgagtgctggttcgtaggat 131  Q
    |||||||||||||||||||||||||||||||||    
T  1468979 ttgtagtcaggatcgagtgctggttcgtaggat 1469011  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 100 - 195
Target Start/End: Complemental strand, 25101126 - 25101031
Alignment:
Q  100 tgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgct 195  Q
    ||||| |||||||||||||||| |||||||||  |||| | |||||||||| |||| ||||| ||| ||||||||| |||| ||||||||||||||    
T  25101126 tgtagccaggatcgagtgctggctcgtaggatcttacgattctatgtcccacggcacctcaaccgtgcttcgacttcactccggttcgtttttgct 25101031  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 195
Target Start/End: Complemental strand, 6539585 - 6539490
Alignment:
Q  100 tgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgct 195  Q
    |||||| ||||||||||||||| ||||||||| ||| | |||||   |||| | |||||||| ||| |||| ||||||||||||||| ||||||||    
T  6539585 tgtagtaaggatcgagtgctggatcgtaggatcgtatgatcctacaccccacgtcatctcaaccgtgcttcaactttactcaggttcatttttgct 6539490  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 18133934 - 18133896
Alignment:
Q  99 ttgtagtcaggatcgagtgctggttcgtaggattgtacg 137  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  18133934 ttgtagtcaggatcgagtgctggctcgtaggattgtacg 18133896  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 23890046 - 23890008
Alignment:
Q  99 ttgtagtcaggatcgagtgctggttcgtaggattgtacg 137  Q
    ||||||||||||||||||||||| ||||||||| |||||    
T  23890046 ttgtagtcaggatcgagtgctggctcgtaggatcgtacg 23890008  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 195
Target Start/End: Original strand, 7227137 - 7227232
Alignment:
Q  100 tgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgct 195  Q
    |||||||||||| ||||||||| || |||||||||||| | ||| ||||||  ||| ||| | | | |||||||||||||| ||||||||||||||    
T  7227137 tgtagtcaggattgagtgctggctcttaggattgtacgattctacgtcccacagcacctcgaccatgcttcgactttactccggttcgtttttgct 7227232  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 194
Target Start/End: Original strand, 50063918 - 50064012
Alignment:
Q  100 tgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgtttttgc 194  Q
    ||||| |||||||||||||||| |||||||||  |||| | ||| || ||| |||| ||||| ||  ||||||||| |||| |||||||||||||    
T  50063918 tgtagccaggatcgagtgctggctcgtaggatcttacgattctacgtgccacggcacctcaaccgagcttcgacttcactccggttcgtttttgc 50064012  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 43061133 - 43061169
Alignment:
Q  99 ttgtagtcaggatcgagtgctggttcgtaggattgta 135  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  43061133 ttgtagtcagggtcgagtgctggtacgtaggattgta 43061169  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 192
Target Start/End: Complemental strand, 10601772 - 10601679
Alignment:
Q  99 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgactttactcaggttcgttttt 192  Q
    ||||||||| | ||||||| | |||||||||||  |||  ||||| |||||||| || ||||||| |  |||||||||||||| ||||||||||    
T  10601772 ttgtagtcaagttcgagtgtttgttcgtaggatcttacaatcctacgtcccatgacacctcaatcatgtttcgactttactcatgttcgttttt 10601679  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 193
Target Start/End: Original strand, 55911185 - 55911279
Alignment:
Q  99 ttgtagtcaggatcgagtgctggttcgtaggattgtacggtcctatgtcccatggcatctcaatcgtacttcgacttt-actcaggttcgtttttg 193  Q
    ||||||||| |||||||||||||||||||||||  |||| |||||  | ||| |||| ||||||||| ||| |||||| | ||| |||||||||||    
T  55911185 ttgtagtcaagatcgagtgctggttcgtaggatcatacgatcctacat-ccacggcacctcaatcgtgctttgactttaagtcaagttcgtttttg 55911279  T

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