View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11721_low_7 (Length: 794)

Name: NF11721_low_7
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11721_low_7
NF11721_low_7
[»] chr5 (1 HSPs)
chr5 (17-778)||(2354161-2354935)


Alignment Details
Target: chr5 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 17 - 778
Target Start/End: Original strand, 2354161 - 2354935
Alignment:
Q  17 actaagaatttctgcttttctttgagctagtgccataaaaagtagtatcatgttcaagcatatcatcgtgccacttgctcccttctgctggtgtcagaaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2354161 actaagaatttctgcttttctttgagctagtgccataaaaagtagtatcatgttcaagcatatcatcgtgccacttgctcccttctgctggtgtcagaaa 2354260  T
Q  117 tttggttcaatatccaaagaccgaaacgattttcatgttgctttcagtctcaattccatgtgccacttgacttgttagagatccctgtcttgnnnnnnnn 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  2354261 tttggttcaatatccaaagaccgaaacgattttcatgttgctttcagtctcaattccatgtgccacttgacttgttagagatccctgtcttgttttttct 2354360  T
Q  217 nnnnnnnnnattgggagcaggccttaaatttggccaaaacaaaatataaagacgcaaaaggacctcattggttattcaagttttggcttttgagggaacc 316  Q
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2354361 tttgcttttattgggagcaggccttaaatttggccaaaacaaaatataaagacgcaaaaggacctcattggttattcaagttttggcttttgagggaacc 2354460  T
Q  317 aaaagttctggcgnnnnnnnnnnnnnnnnnnnnctgtccacacccatattagcttcttaattactagttcatcacaaaattaaaaaggagaatatccttt 416  Q
    |||||||||||||                    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2354461 aaaagttctggcgttttcttttgttttatttttctgtccacacccatattagcttcttaattactagttcatcacaaaattaaaaaggagaatatccttt 2354560  T
Q  417 tcattttagttttttcttacaaacttgatgtgatcggaacttttaggagcctaaagaagaaatacgtttcatccttcaaatgaatccc------------ 504  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||                
T  2354561 tcattttagttttttcgtactaacttgatgtgatcggaacttttaggagcctaaagaagaaatacgtttcatctttcaaatgaatccctaactatattag 2354660  T
Q  505 --ggtgagggatggactatgtcacgactcacgatatttcaaaaacaaaattcgacatcaacattgcatgtatatgtgatctacgattttaatattttttc 602  Q
      ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2354661 tcggtgagg-atggactatgtcacaactcacgatatttcaaaaacaaaattcgacatcaacattgcatgtatatgtgatctacgattttcatattttttc 2354759  T
Q  603 tctcattcagcaatttttacaccacacattctaattatattttatacaatgtcaaatatgatatttgacttatgtacttatatatggttttcgattttaa 702  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2354760 tctcattcagcaatttttacaccacacattctaattatattttatacaatgtcaaatatgatatttgacttatgtacttatatattgttttcgattttaa 2354859  T
Q  703 tcatgttctctctcttcctctctcatcaattctgaaaccacgctacacacattttagctacaatgtaatatgatgt 778  Q
    ||||||||||||||||||||||||||||||| ||||||||  ||||||| |||||| |||||||||||||||||||    
T  2354860 tcatgttctctctcttcctctctcatcaattttgaaaccatactacacatattttaactacaatgtaatatgatgt 2354935  T

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