View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11721_low_89 (Length: 237)
Name: NF11721_low_89
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_low_89 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 46156041 - 46155819
Alignment:
| Q |
1 |
tggaaaaatttcatatgctaacagtgaattttaagaaagttatgcctatgtggatttcttgcaatttgtgtaatcaaaagcacatattctgaattcacac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46156041 |
tggaaaaatttcatatgctaacagtgaattttaagaaagttatgcctatgtggatttcttgcaatttgtgtaatcaaaagcacatattctgaattcacac |
46155942 |
T |
|
| Q |
101 |
agccaatattaa-nnnnnnnnaaacaatcctaaatggatttgtattgtcatgaggattctgctacataattatgcaggataggtgccaatgtggtgggaa |
199 |
Q |
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|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46155941 |
agccaatattaattttttttcaaacaatcctaaatggatttgtgctgtcatgaggattctgctacataattatgcaggataggtgccaatgtggtgggaa |
46155842 |
T |
|
| Q |
200 |
tggatacaactagaggtgaacat |
222 |
Q |
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||||||||||||||||||||||| |
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| T |
46155841 |
tggatacaactagaggtgaacat |
46155819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 15613621 - 15613843
Alignment:
| Q |
1 |
tggaaaaatttcatatgctaacagtgaattttaagaaagttatgcctatgtggatttcttgcaatttgtgtaatcaaaagcacatattctgaattcacac |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
15613621 |
tggaaaaatttcatatgctaatagtgaattttaagaaagttatgcctatgtgggtttcttgcaatttgtgtaataaaaatcacatattctgaattcacac |
15613720 |
T |
|
| Q |
101 |
agccaatattaa-nnnnnnnnaaacaatcctaaatggatttgtattgtcatgaggattctgctacataattatgcaggataggtgccaatgtggtgggaa |
199 |
Q |
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|||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15613721 |
agccaatattaatttttattcaaacaatcctaaatgaatttgtgttgtcatgaggattctgctacataattatgcaggataggtgccaatgtggtgggaa |
15613820 |
T |
|
| Q |
200 |
tggatacaactagaggtgaacat |
222 |
Q |
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||||||||||||||||||||||| |
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| T |
15613821 |
tggatacaactagaggtgaacat |
15613843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 32768222 - 32767996
Alignment:
| Q |
1 |
tggaaaaatttcatatgctaacagtgaattttaagaaagttatgcctatgtggatttcttgcaatttgtgtaatcaaaagcacatattctgaattcacac |
100 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32768222 |
tggacaaatttcatatgctaacagtgaattttaagaaagttatgcctatgtggatttcttgcaatttgtgtaatcaaaagcacatattctgaattcacac |
32768123 |
T |
|
| Q |
101 |
agccaatattaa-nnnnnnnnaaacaatcctaaatggatttgtattgtcatgaggattctgctacataattatgcag----gataggtgccaatgtggtg |
195 |
Q |
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|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32768122 |
agccaatattaattttttttcaaacaatcctaaatggatttgtgctgtcatgaggattctgctacataattatgcaggatagataggtgccaatgtggtg |
32768023 |
T |
|
| Q |
196 |
ggaatggatacaactagaggtgaacat |
222 |
Q |
| |
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||||||||||||||||||||||||||| |
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|
| T |
32768022 |
ggaatggatacaactagaggtgaacat |
32767996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 29900815 - 29900883
Alignment:
| Q |
131 |
aaatggatttgtattgtcatgaggattctgctacataattatgcaggataggtgccaatgtggtgggaa |
199 |
Q |
| |
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|||||||||||| |||| |||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29900815 |
aaatggatttgtgctgtcttgagaattgtgctacataattatgcaggataggtgccaatgtggtgggaa |
29900883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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