View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11721_low_90 (Length: 235)
Name: NF11721_low_90
Description: NF11721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11721_low_90 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 293043 - 293276
Alignment:
| Q |
1 |
ttcccaactcgccatggcgagttctagctcacccggcgacttgtgacaatctagaattctgcagaaaacgtatttttgcataaaagcctcaatttcaagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
293043 |
ttcccaactcgccatggcgagttctagctcacccggcgacttgtgacagtctagaattctgcagaaaacgtatttttgcataaaagcctcaattttaagc |
293142 |
T |
|
| Q |
101 |
atcataaggtacatggcacttccagaacac----nnnnnnncagtaggaattataatacatgacattattaatatgttcttga-------------aaag |
183 |
Q |
| |
|
|||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
293143 |
atcataaggtacctagcacttccagaacacaaaaaaaaaaacagtaggaattataatacatgacattattaacatgttcttgacgatatatggtacaaag |
293242 |
T |
|
| Q |
184 |
gggttctctacacacctatttcataaactatcac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
293243 |
gggttctctacacacctatttcataaactatcac |
293276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 37985332 - 37985464
Alignment:
| Q |
1 |
ttcccaactcgccatggcgagttctagctcacccggcgacttgtgacaatctagaattctgcagaaaacgtatttttgcat---aaaagcctcaatttca |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||| |||||||| || ||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
37985332 |
ttcccaactcgccatggcgagttctagctcgcccgacgagttgtgacagtccagaattctgcagaaaacgtatttttgcataaaaaaaacctcaatttca |
37985431 |
T |
|
| Q |
98 |
agcatcataaggtacatggcacttccagaacac |
130 |
Q |
| |
|
||||||||||||||| || ||||||||||||| |
|
|
| T |
37985432 |
agcatcataaggtacctgatacttccagaacac |
37985464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 25239484 - 25239533
Alignment:
| Q |
18 |
cgagttctagctcacccggcgacttgtgacaatctagaattctgcagaaa |
67 |
Q |
| |
|
||||||||||||| |||||||| |||||||| || ||||||||||||||| |
|
|
| T |
25239484 |
cgagttctagctcgcccggcgagttgtgacagtccagaattctgcagaaa |
25239533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University