View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11722_high_1 (Length: 1042)
Name: NF11722_high_1
Description: NF11722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11722_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 703; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 703; E-Value: 0
Query Start/End: Original strand, 244 - 1030
Target Start/End: Original strand, 8931612 - 8932405
Alignment:
| Q |
244 |
ggatggcacgccagcttttgagatgagaaagcgattcagcactaaggtactctacaaggcttgctgttgcatttctcctgcttaagctttatcagcatac |
343 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8931612 |
ggatggcacgccagcttttgagatgagaaagcgattcagcactaaggtactctacaaggcttgctgttgcatttctcctgcttaagctttatcagcatac |
8931711 |
T |
|
| Q |
344 |
aacacaacttaaa-------gagaaacccgcacacgctaaacattagatggaacacatgcgagtacacaccaaaaagagataaaaataacgcacagagtg |
436 |
Q |
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|| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| || |
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| T |
8931712 |
aagacaacttaaaatatcaggagaaacccgcacacgccaaacattagatggaacacatgcgagtacacaccgaaaaaagataaaaataacgcacagattg |
8931811 |
T |
|
| Q |
437 |
aacgtggttcggcacttcatacctgctttcatgaaaacatctcagcataaagtatgcactgtaacctcaaggtgctaactcggtggtaagagtttagcat |
536 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8931812 |
aacgtggttcggcacctcatacctgcattcatgaaaacatctcagcataaagtatgcactgtaacctcaaggtgctaactcggtggtaagagtttagcat |
8931911 |
T |
|
| Q |
537 |
tgtaaccgcaaggtgctgagttcaaatccccactgggacggctgtaaaatggttattagtccaataattggattacatcaaagtaagacagcaaaccatg |
636 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8931912 |
tgtaaccgcaaggtgctgagttcaaatccccactgggacggctgtaaaatggttattagtccaataattggattacatcaaagtaagacagcaaaccatg |
8932011 |
T |
|
| Q |
637 |
tctactaaacatataaactcaatgtagcaaatcaaaacctcgctgtaaaatggtcaatacaagcagcatttgatagaataaattatcaaacaaacctttt |
736 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8932012 |
tctactaaacaaataaactcaatgtagcaaatcaaaacctcgctgtaaaatggtcaatacaagcagcatttgatagaataaataatcaaacaaacctttt |
8932111 |
T |
|
| Q |
737 |
caagttatcatgggagcaaaacattgcaacaacatattcatttgatagcaagagaacaagaacaatagactaatctttggtttgtgaaattaattattgg |
836 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8932112 |
caagttatcatgggagcaaaacattgcaacaacatattcatttgatagcaagagaacaagaacaatagactaatctttggtttgtgaaattaattattgg |
8932211 |
T |
|
| Q |
837 |
aaactcaatcnnnnnnntaatattcagaaataatttgcttatggtagaatttcatgggaaaacagctgcagaactatccaaaattttcaatttgtgttta |
936 |
Q |
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| T |
8932212 |
aaactcaatcaaaaaaataatattcagaaataatttgcttatggtagaatttcatgggaaaacagctgcagaactatccaaaattttcaatttgtgttta |
8932311 |
T |
|
| Q |
937 |
aaaggattccagaacagaagttcattttgagctcaaattatgaaggaaattctatccatgggcttcattggagacacatcattctttcatctca |
1030 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
8932312 |
aaaggattccagaacagaagttcattttgagctcaaattatgaaggaaattctgtccataggcttcattggagacacatcattctttcatctca |
8932405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 9e-76
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 8931365 - 8931526
Alignment:
| Q |
1 |
gtaagagcatatatttttcttatctact----taaatcatgtgagtgatgataaaatcaacaatcatgcatggctattttttcacattgcgacaaattaa |
96 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8931365 |
gtaagagcatatatttttcttatctacttacttaaatcatgtgagtgatgataaaatcaacaatcatgcatggctattttttcacattgcgacaaattaa |
8931464 |
T |
|
| Q |
97 |
ccagtgtttatcaatcatcatactaaatgcttctccactcaacgagagaaacaattcattcc |
158 |
Q |
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| T |
8931465 |
ccagtgtttatcaatcatcatactaaatgcttctccactcaacgagagaaacaattcattcc |
8931526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 3e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 514 - 596
Target Start/End: Complemental strand, 49443658 - 49443576
Alignment:
| Q |
514 |
actcggtggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatccccactgggacggctgtaaaatggttattagt |
596 |
Q |
| |
|
|||| |||||||||||||||| |||||||| |||||| | ||||||||||||| | ||||||| |||||||||||||||||| |
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| T |
49443658 |
actctgtggtaagagtttagccttgtaacctcaaggtacaaagttcaaatcccctcggggacggttgtaaaatggttattagt |
49443576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 506 - 567
Target Start/End: Original strand, 50892220 - 50892281
Alignment:
| Q |
506 |
aggtgctaactcggtggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatcccc |
567 |
Q |
| |
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| T |
50892220 |
aggtgctagctcagtggtaagagcttagccttgtaacctcaaggtgctgagttctaatcccc |
50892281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 506 - 567
Target Start/End: Complemental strand, 48751439 - 48751378
Alignment:
| Q |
506 |
aggtgctaactcggtggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatcccc |
567 |
Q |
| |
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|||||||| || |||| ||||| |||||||||||||| |||| |||||||||| ||||||| |
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| T |
48751439 |
aggtgctagctaagtggcaagagcttagcattgtaacctcaagttgctgagttcgaatcccc |
48751378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 506 - 567
Target Start/End: Original strand, 31584881 - 31584942
Alignment:
| Q |
506 |
aggtgctaactcggtggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatcccc |
567 |
Q |
| |
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|||||||| ||| ||||||||| |||||||||||||| |||||| |||||||||||||||| |
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| T |
31584881 |
aggtgctagctcaatggtaagagcttagcattgtaacctcaaggtactgagttcaaatcccc |
31584942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 506 - 587
Target Start/End: Complemental strand, 36198980 - 36198899
Alignment:
| Q |
506 |
aggtgctaactcggtggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatccccactgggacggctgtaaaatg |
587 |
Q |
| |
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|||||||| || |||||||||| ||||| |||||||| |||||| |||||||||||||||| | |||| || ||||||||| |
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| T |
36198980 |
aggtgctagcttagtggtaagagcttagccttgtaacctcaaggtactgagttcaaatcccctcggggatggttgtaaaatg |
36198899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 527 - 564
Target Start/End: Original strand, 23548584 - 23548621
Alignment:
| Q |
527 |
agtttagcattgtaaccgcaaggtgctgagttcaaatc |
564 |
Q |
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| T |
23548584 |
agtttagcattgtaacctcgaggtgctgagttcaaatc |
23548621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 506 - 589
Target Start/End: Original strand, 43710570 - 43710653
Alignment:
| Q |
506 |
aggtgctaactcggtggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatccccactgggacggctgtaaaatggt |
589 |
Q |
| |
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|||||||| | |||||||||||| ||||| |||||||| | ||||| ||||||| ||||||| | ||||| | ||| ||||||| |
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| T |
43710570 |
aggtgctagcacggtggtaagagattagccttgtaaccccgaggtgttgagttcgaatcccctcggggacagttgtgaaatggt |
43710653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 506 - 596
Target Start/End: Original strand, 43427779 - 43427869
Alignment:
| Q |
506 |
aggtgctaactcggtggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatccccactgggacggctgtaaaatggttattagt |
596 |
Q |
| |
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|||||||| ||| ||||||||||||| || |||||||| ||||| |||||||||||||| | |||| |||||||||||||||||| |
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| T |
43427779 |
aggtgctagctcagtggtaagagtttggccttgtaacctcaagggagggagttcaaatccccttggatacggttgtaaaatggttattagt |
43427869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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