View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11722_high_11 (Length: 353)
Name: NF11722_high_11
Description: NF11722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11722_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 8 - 253
Target Start/End: Original strand, 44946002 - 44946247
Alignment:
| Q |
8 |
ggagaagcagagaagattagaggctgaggatgctgccatggggaagaagaacaggattactagagatagggatcgtgatataagtgagaaacttgatctt |
107 |
Q |
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| T |
44946002 |
ggagaaggagagaagattagaagctgaggatgctgccatggggaagaagagcaggattactagagatagggatcgtgatataagtgagaaacttgatctt |
44946101 |
T |
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| Q |
108 |
ggttatgcttctactaagcatgggacagagttcctgtacgatgaaaggctattcaacgagaataaatccaccttgttcacgccgaagaaagatgtttaca |
207 |
Q |
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| T |
44946102 |
ggttatgcttctcctaagcatgggacagaggttctgtacgatgaaaggctattcaacgaggataaatccaccttgttcacgccgaagaaagatgtttaca |
44946201 |
T |
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| Q |
208 |
cattgatgaagaagctggccgagtttgagcctgaaaaagctgatcc |
253 |
Q |
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| T |
44946202 |
cattgatgaagaagctggccgagtttgagcctgaaaaagctgatcc |
44946247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 8 - 173
Target Start/End: Complemental strand, 11454944 - 11454779
Alignment:
| Q |
8 |
ggagaagcagagaagattagaggctgaggatgctgccatggggaagaagaacaggattactagagatagggatcgtgatataagtgagaaacttgatctt |
107 |
Q |
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| T |
11454944 |
ggagaaggagagaaggatagaagctaaggatgctgccatgggaaagaagagcaagattactagagatagggatcgtgatataagtgagaaagttgctctt |
11454845 |
T |
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| Q |
108 |
ggttatgcttctactaagcatgggacagagttcctgtacgatgaaaggctattcaacgagaataaa |
173 |
Q |
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| T |
11454844 |
ggtatggcttccaccaagcaagggacagaggtcatgtatgatgagaggctattcaaccaggataaa |
11454779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 395271 - 395347
Alignment:
| Q |
34 |
aggatgctgccatggggaagaagaacaggattactagagatagggatcgtgatataagtgagaaacttgatcttggt |
110 |
Q |
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|||||| || |||||| |||||| || |||||||||||||| ||||||||||||||||||||| ||| ||||||| |
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| T |
395271 |
aggatgttggcatgggaaagaagtgcaagattactagagataaggatcgtgatataagtgagaaggttgctcttggt |
395347 |
T |
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