View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11722_high_13 (Length: 322)
Name: NF11722_high_13
Description: NF11722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11722_high_13 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 3 - 322
Target Start/End: Complemental strand, 33433359 - 33433037
Alignment:
| Q |
3 |
gaatttcctttctccacttccaagcattcctaataaccgaaagnnnnnnn----tatacaaagtttagaaaagtgaaaaccgcaacgaaatttgtaacag |
98 |
Q |
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| T |
33433359 |
gaatttcctttctccacttccaagcattcctaataaccgaaagaaaaaaaaaaatatacaaagtttagaaaagtgaaaaccgcaacgaaatttgtaacag |
33433260 |
T |
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| Q |
99 |
taactttccacagtaaaaaagaaattaaccttgtcaaggtcctcacgagagcgcgtgagactttcgtagttcttatactgtttcaaacgagtttcacgat |
198 |
Q |
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|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33433259 |
taactttccacaataaaaa-gaaattaaccttgtcaaggtcctcacgagagcgcgtgagacattcgtagttcttatactgtttcaaacgagtttcacgat |
33433161 |
T |
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| Q |
199 |
attcatctctactataattaagcttctcccatggaattccttgaatatctttcccgtttcgtgcttcgaaagctgaagtatcagtctttacattactctg |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33433160 |
attcatctctactataattaagcttctcccatggaattccttgaatatctttcccgtttcgtgcttcgaaagctgaagtatcagtctttacattactctg |
33433061 |
T |
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| Q |
299 |
ttcttccaaaccaaaatgaaaact |
322 |
Q |
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|||||||||||||||||||||||| |
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| T |
33433060 |
ttcttccaaaccaaaatgaaaact |
33433037 |
T |
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