View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11722_high_16 (Length: 276)

Name: NF11722_high_16
Description: NF11722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11722_high_16
NF11722_high_16
[»] chr1 (21 HSPs)
chr1 (74-252)||(30694536-30694713)
chr1 (74-172)||(508461-508559)
chr1 (74-172)||(37553338-37553436)
chr1 (78-172)||(13413820-13413914)
chr1 (74-172)||(49901535-49901633)
chr1 (86-151)||(27055921-27055986)
chr1 (86-151)||(29119091-29119156)
chr1 (86-151)||(46435205-46435270)
chr1 (86-151)||(35760243-35760308)
chr1 (1-42)||(36018090-36018131)
chr1 (1-42)||(37553265-37553306)
chr1 (78-155)||(52594847-52594924)
chr1 (78-162)||(36018167-36018251)
chr1 (1-42)||(13413950-13413991)
chr1 (1-42)||(30694463-30694504)
chr1 (1-42)||(49901462-49901503)
chr1 (1-41)||(508592-508632)
chr1 (100-155)||(46832704-46832759)
chr1 (1-41)||(29119200-29119240)
chr1 (1-41)||(35760352-35760392)
chr1 (1-41)||(46435314-46435354)
[»] chr2 (14 HSPs)
chr2 (74-170)||(6831386-6831482)
chr2 (74-172)||(13829674-13829772)
chr2 (74-172)||(31659555-31659653)
chr2 (74-172)||(3670579-3670676)
chr2 (78-166)||(10862777-10862865)
chr2 (1-42)||(6831501-6831542)
chr2 (78-155)||(14798945-14799022)
chr2 (1-42)||(3670708-3670749)
chr2 (1-42)||(10862899-10862940)
chr2 (1-42)||(31659483-31659524)
chr2 (90-172)||(29513285-29513367)
chr2 (74-120)||(39443444-39443490)
chr2 (1-42)||(14798867-14798908)
chr2 (100-172)||(29404188-29404258)
[»] chr4 (11 HSPs)
chr4 (74-169)||(34293394-34293489)
chr4 (74-150)||(7017244-7017320)
chr4 (78-154)||(53732289-53732365)
chr4 (77-172)||(34041785-34041879)
chr4 (86-151)||(23996259-23996324)
chr4 (78-155)||(1687945-1688022)
chr4 (135-172)||(8434442-8434479)
chr4 (1-42)||(34293324-34293365)
chr4 (74-142)||(46798840-46798908)
chr4 (1-42)||(1688057-1688098)
chr4 (1-42)||(34041913-34041954)
[»] chr7 (15 HSPs)
chr7 (74-172)||(1507399-1507497)
chr7 (78-169)||(24790836-24790927)
chr7 (74-172)||(9963827-9963921)
chr7 (74-155)||(23102794-23102875)
chr7 (78-166)||(2658338-2658426)
chr7 (74-172)||(10982365-10982463)
chr7 (78-172)||(47412964-47413058)
chr7 (1-42)||(1507529-1507570)
chr7 (1-42)||(9963952-9963993)
chr7 (94-155)||(33473754-33473815)
chr7 (78-154)||(9158589-9158665)
chr7 (8-42)||(2658463-2658497)
chr7 (1-42)||(9158701-9158742)
chr7 (1-42)||(23102721-23102762)
chr7 (10-42)||(33473670-33473702)
[»] chr8 (22 HSPs)
chr8 (74-172)||(1566008-1566106)
chr8 (74-172)||(13474667-13474765)
chr8 (74-163)||(9479229-9479318)
chr8 (85-172)||(19238335-19238422)
chr8 (85-172)||(19311519-19311606)
chr8 (74-172)||(38776495-38776592)
chr8 (74-172)||(4203314-4203412)
chr8 (105-170)||(1554281-1554346)
chr8 (86-151)||(3469002-3469067)
chr8 (74-147)||(44374415-44374488)
chr8 (1-42)||(44374520-44374561)
chr8 (80-166)||(34347614-34347700)
chr8 (1-42)||(1565935-1565976)
chr8 (1-42)||(8625048-8625089)
chr8 (1-42)||(13474797-13474838)
chr8 (1-42)||(38776420-38776461)
chr8 (86-151)||(42907053-42907118)
chr8 (78-117)||(8625125-8625164)
chr8 (103-155)||(15540552-15540604)
chr8 (78-133)||(40302350-40302405)
chr8 (119-172)||(42443050-42443103)
chr8 (95-128)||(42443288-42443321)
[»] chr3 (22 HSPs)
chr3 (74-172)||(6475338-6475436)
chr3 (74-172)||(6515464-6515562)
chr3 (74-172)||(6746504-6746602)
chr3 (74-172)||(44682390-44682488)
chr3 (74-169)||(8814581-8814676)
chr3 (77-172)||(45713982-45714077)
chr3 (74-172)||(22896687-22896785)
chr3 (74-170)||(27077861-27077957)
chr3 (74-170)||(27083658-27083754)
chr3 (1-42)||(45713906-45713947)
chr3 (74-118)||(42370823-42370867)
chr3 (86-151)||(30991849-30991914)
chr3 (78-166)||(27065476-27065559)
chr3 (74-172)||(25891570-25891668)
chr3 (99-172)||(46970670-46970741)
chr3 (1-42)||(6515391-6515432)
chr3 (1-42)||(27077989-27078030)
chr3 (1-42)||(27083786-27083827)
chr3 (1-42)||(44682317-44682358)
chr3 (81-172)||(31153660-31153751)
chr3 (1-42)||(42370888-42370929)
chr3 (1-41)||(30991766-30991806)
[»] chr5 (10 HSPs)
chr5 (74-161)||(9514588-9514675)
chr5 (74-173)||(36896843-36896942)
chr5 (74-172)||(28867744-28867842)
chr5 (86-151)||(18014223-18014288)
chr5 (86-151)||(14149140-14149205)
chr5 (78-151)||(39057857-39057930)
chr5 (1-42)||(9514707-9514748)
chr5 (1-42)||(28867874-28867915)
chr5 (74-148)||(26637428-26637502)
chr5 (1-42)||(36896770-36896811)
[»] scaffold0006 (2 HSPs)
scaffold0006 (78-172)||(280356-280450)
scaffold0006 (7-42)||(280486-280521)
[»] scaffold1532 (2 HSPs)
scaffold1532 (78-172)||(1331-1425)
scaffold1532 (1-42)||(1461-1502)
[»] chr6 (4 HSPs)
chr6 (74-147)||(18053404-18053477)
chr6 (1-42)||(13865904-13865945)
chr6 (1-42)||(18053509-18053550)
chr6 (139-172)||(18052922-18052955)
[»] scaffold0002 (2 HSPs)
scaffold0002 (78-155)||(452700-452777)
scaffold0002 (1-41)||(452814-452854)
[»] scaffold0778 (1 HSPs)
scaffold0778 (98-155)||(3562-3619)


Alignment Details
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 74 - 252
Target Start/End: Original strand, 30694536 - 30694713
Alignment:
Q  74 aagctagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaacttgcaa 173  Q
    ||||||||||||||| |  |||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||     
T  30694536 aagctagttacaaaactgtccttttatttaaaattaattataatataaacaaaagggtgtattaataaattataagtgggtgcagcttgctaacttgcag 30694635  T
Q  174 caaccccctataaataaaaaggataaaataaatccgggtatattttattgaaaaatgttaactaatgtctctaagatac 252  Q
    ||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||    
T  30694636 caa-cccctataaataaaaaggataaaataaatccggctatattttattcaaaaatgttaactaatgtctctaaaatac 30694713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 74 - 172
Target Start/End: Complemental strand, 508559 - 508461
Alignment:
Q  74 aagctagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaacttgca 172  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||| |||||||||||||    
T  508559 aagctagttacaaaattgcccttctatttaaaattaattagaatataaacaaaagagtgttttagtaaattataagtcggtgcagcttgctaacttgca 508461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 37553338 - 37553436
Alignment:
Q  74 aagctagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaacttgca 172  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||| |||||||||||||    
T  37553338 aagctagttacaaaatttcccttctatttaaaattaattagaatataaacaaaagagtgttttagtaaattataagtcggtgcagcttgctaacttgca 37553436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 78 - 172
Target Start/End: Complemental strand, 13413914 - 13413820
Alignment:
Q  78 tagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaacttgca 172  Q
    ||||||||||| | || ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||| |||||||||||||    
T  13413914 tagttacaaaactgccattctatttaaaattaattagaatataaacaaaatggtgttttagtaaattataagtggttgcagcttgctaacttgca 13413820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 49901535 - 49901633
Alignment:
Q  74 aagctagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaacttgca 172  Q
    |||||| ||||||||||  | |||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||| ||||| |||||||    
T  49901535 aagctaattacaaaattgtcattctatttaaaattaattagaatataaataaaagggtcttttagtaaattataagtgggtgcagcttgcttacttgca 49901633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 27055921 - 27055986
Alignment:
Q  86 aaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtg 151  Q
    ||||| |||||||||||||| |||||||||||| |||||||| ||||| |||||||| ||||||||    
T  27055921 aaattgcccttctatttaaatttaattagaatagaaacaaaaaggtgttttagtaaaatataagtg 27055986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 29119156 - 29119091
Alignment:
Q  86 aaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtg 151  Q
    ||||| |||||||||||||| |||||||||||| |||||||| ||||| |||||||| ||||||||    
T  29119156 aaatttcccttctatttaaatttaattagaatagaaacaaaaaggtgttttagtaaaatataagtg 29119091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 46435270 - 46435205
Alignment:
Q  86 aaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtg 151  Q
    ||||| |||||||||||||| |||||||||||| |||||||| ||||| |||||||| ||||||||    
T  46435270 aaattgcccttctatttaaatttaattagaatagaaacaaaaaggtgttttagtaaaatataagtg 46435205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 35760308 - 35760243
Alignment:
Q  86 aaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtg 151  Q
    ||||| |||||||||||||| |||||||||||| |||||||| || || |||||||| ||||||||    
T  35760308 aaattgcccttctatttaaatttaattagaatagaaacaaaaaggcgttttagtaaaatataagtg 35760243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 36018090 - 36018131
Alignment:
Q  1 ttgtctttattacatgttttgtaccttaaacatgtcattgtc 42  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  36018090 ttgtctctattacatgttttgtaccttaaacatgtcattgtc 36018131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 37553265 - 37553306
Alignment:
Q  1 ttgtctttattacatgttttgtaccttaaacatgtcattgtc 42  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  37553265 ttgtctttattacatgttttgtaccttaagcatgtcattgtc 37553306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 52594924 - 52594847
Alignment:
Q  78 tagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtg 155  Q
    |||||||||||||  |||||| |||||| |||||||||||| ||| |||| ||||| ||| |||| ||||||||||||    
T  52594924 tagttacaaaattgtccttctgtttaaatttaattagaataaaaataaaatggtgttttaataaaatataagtgggtg 52594847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 36018167 - 36018251
Alignment:
Q  78 tagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttg 162  Q
    ||||||||||| |  | ||||||||||| ||||||| |||| ||| |||| ||||| |||||||| |||||||||||| ||||||    
T  36018167 tagttacaaaactgtcattctatttaaatttaattaaaatagaaataaaatggtgttttagtaaaatataagtgggtgtagtttg 36018251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 13413991 - 13413950
Alignment:
Q  1 ttgtctttattacatgttttgtaccttaaacatgtcattgtc 42  Q
    |||||||||||| ||||||||||| |||||||||||||||||    
T  13413991 ttgtctttattatatgttttgtactttaaacatgtcattgtc 13413950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 30694463 - 30694504
Alignment:
Q  1 ttgtctttattacatgttttgtaccttaaacatgtcattgtc 42  Q
    |||||||||||||||||||||||| |||| ||||||||||||    
T  30694463 ttgtctttattacatgttttgtacgttaagcatgtcattgtc 30694504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 49901462 - 49901503
Alignment:
Q  1 ttgtctttattacatgttttgtaccttaaacatgtcattgtc 42  Q
    ||||||||||||||| ||||||||||||||||| ||||||||    
T  49901462 ttgtctttattacatattttgtaccttaaacatttcattgtc 49901503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 508632 - 508592
Alignment:
Q  1 ttgtctttattacatgttttgtaccttaaacatgtcattgt 41  Q
    ||||||||||||||| ||||||||||||| |||||||||||    
T  508632 ttgtctttattacatattttgtaccttaagcatgtcattgt 508592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 46832759 - 46832704
Alignment:
Q  100 tttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtg 155  Q
    |||||| |||||||||||| |||||||| ||||| |||||||| ||||||| ||||    
T  46832759 tttaaatttaattagaatagaaacaaaatggtgttttagtaaaatataagtaggtg 46832704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 29119240 - 29119200
Alignment:
Q  1 ttgtctttattacatgttttgtaccttaaacatgtcattgt 41  Q
    |||||| ||||||||||||| ||||||||||||| ||||||    
T  29119240 ttgtctctattacatgttttataccttaaacatgccattgt 29119200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 35760392 - 35760352
Alignment:
Q  1 ttgtctttattacatgttttgtaccttaaacatgtcattgt 41  Q
    |||||| ||||||||||||| |||||||| |||||||||||    
T  35760392 ttgtctgtattacatgttttataccttaagcatgtcattgt 35760352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 46435354 - 46435314
Alignment:
Q  1 ttgtctttattacatgttttgtaccttaaacatgtcattgt 41  Q
    |||||| ||||||||||||| ||||||| ||||||||||||    
T  46435354 ttgtctctattacatgttttataccttagacatgtcattgt 46435314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 74 - 170
Target Start/End: Complemental strand, 6831482 - 6831386
Alignment:
Q  74 aagctagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaacttg 170  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  6831482 aagctagttacaaaattgcccttctatttaaaattaattagaatataaacaaaagggtgttttagtaaattataagtgggtgcagcttgctaacttg 6831386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 13829674 - 13829772
Alignment:
Q  74 aagctagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaacttgca 172  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||    
T  13829674 aagctagttacaaaattgcccttctatttaaaattaattagaatataaacaaaagggtgttttagcaaattataagtgggtgcagcttgctaacttgca 13829772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 31659555 - 31659653
Alignment:
Q  74 aagctagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaacttgca 172  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  31659555 aagctagttacaaaattgcccttctatttaaatttaattagaatataaacaaaagggtgttttagtaaattataagtgggtgcagcttgctaacttgca 31659653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 74 - 172
Target Start/End: Complemental strand, 3670676 - 3670579
Alignment:
Q  74 aagctagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaacttgca 172  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||  |||||||||||||    
T  3670676 aagctagttacaaa-ttgcccttctatttaaaattaattagaatataaacaaaagggtgttttagtaaattataagtggatgcaacttgctaacttgca 3670579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 78 - 166
Target Start/End: Complemental strand, 10862865 - 10862777
Alignment:
Q  78 tagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaa 166  Q
    ||||||||||| | |||||||||||||| |||||||||||| |||||||||||||| |||||||| |||||||||||| || |||||||    
T  10862865 tagttacaaaactgcccttctatttaaatttaattagaatagaaacaaaagggtgttttagtaaaatataagtgggtgtagcttgctaa 10862777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 6831542 - 6831501
Alignment:
Q  1 ttgtctttattacatgttttgtaccttaaacatgtcattgtc 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  6831542 ttgtctttattacatgttttgtaccttaaacatgtcattgtc 6831501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 14798945 - 14799022
Alignment:
Q  78 tagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtg 155  Q
    ||||||||||| | |||||||||||||| |||||||||||| ||| |||| | ||| |||||||| ||| ||||||||    
T  14798945 tagttacaaaactgcccttctatttaaatttaattagaatagaaataaaatgatgttttagtaaaatatgagtgggtg 14799022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 3670749 - 3670708
Alignment:
Q  1 ttgtctttattacatgttttgtaccttaaacatgtcattgtc 42  Q
    |||||||||||| |||||||||||||||| ||||||||||||    
T  3670749 ttgtctttattatatgttttgtaccttaagcatgtcattgtc 3670708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 10862940 - 10862899
Alignment:
Q  1 ttgtctttattacatgttttgtaccttaaacatgtcattgtc 42  Q
    ||||| ||||||||||||||||||||||| ||||||||||||    
T  10862940 ttgtccttattacatgttttgtaccttaagcatgtcattgtc 10862899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 31659483 - 31659524
Alignment:
Q  1 ttgtctttattacatgttttgtaccttaaacatgtcattgtc 42  Q
    |||||||||||| |||||||||||||||| ||||||||||||    
T  31659483 ttgtctttattatatgttttgtaccttaagcatgtcattgtc 31659524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 172
Target Start/End: Complemental strand, 29513367 - 29513285
Alignment:
Q  90 tacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaacttgca 172  Q
    |||| |||| ||||||||||||| || |||| ||||||||||||  | |||||| |  ||| ||||||| |||||||||||||    
T  29513367 tacctttctttttaaaattaatttgagtatagacaaaagggtgttatggtaaataactagtaggtgcagcttgctaacttgca 29513285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 120
Target Start/End: Complemental strand, 39443490 - 39443444
Alignment:
Q  74 aagctagttacaaaattacccttctatttaaaattaattagaatata 120  Q
    |||||||||||||||||  | |||||||||||||||| |||||||||    
T  39443490 aagctagttacaaaattgacattctatttaaaattaactagaatata 39443444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 14798867 - 14798908
Alignment:
Q  1 ttgtctttattacatgttttgtaccttaaacatgtcattgtc 42  Q
    |||||| |||||||||||||||| ||||| ||||||||||||    
T  14798867 ttgtctctattacatgttttgtatcttaagcatgtcattgtc 14798908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 172
Target Start/End: Complemental strand, 29404258 - 29404188
Alignment:
Q  100 tttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaacttgca 172  Q
    ||||||||||||| ||||| | |  ||||||||| |||||||| || ||||||||| || |||||||||||||    
T  29404258 tttaaaattaatttgaatagata--aaagggtgtgttagtaaaatacaagtgggtgtagcttgctaacttgca 29404188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 74 - 169
Target Start/End: Original strand, 34293394 - 34293489
Alignment:
Q  74 aagctagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaactt 169  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  34293394 aagctagttacaaaattacccttctatttaaaattaattataatataaacaaaagggtgttttagtaaattataagtgggtgcagcttgctaactt 34293489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 7017244 - 7017320
Alignment:
Q  74 aagctagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagt 150  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  7017244 aagctagttacaaaattgcccttctacttaaaattaattagaatataaacaaaagggtgttttagtcaattataagt 7017320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 154
Target Start/End: Original strand, 53732289 - 53732365
Alignment:
Q  78 tagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggt 154  Q
    ||||||||||| |||||||||||||||| |||||||||||| |||||||||| ||| |||||||| |||||||||||    
T  53732289 tagttacaaaactacccttctatttaaatttaattagaatagaaacaaaaggatgttttagtaaaatataagtgggt 53732365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 77 - 172
Target Start/End: Complemental strand, 34041879 - 34041785
Alignment:
Q  77 ctagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaacttgca 172  Q
    ||||||||||||||  ||||  |||||||||| ||||||||||||||||||  |||| ||||||||||| | |||||||||| |||||||||||||    
T  34041879 ctagttacaaaattgtcctttcatttaaaattgattagaatataaacaaaa-agtgttttagtaaattacacgtgggtgcagcttgctaacttgca 34041785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 23996324 - 23996259
Alignment:
Q  86 aaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtg 151  Q
    ||||| |||||||||||||| |||||||||||| |||||||| ||||| |||||||| ||||||||    
T  23996324 aaattgcccttctatttaaatttaattagaatagaaacaaaaaggtgttttagtaaaatataagtg 23996259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 1688022 - 1687945
Alignment:
Q  78 tagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtg 155  Q
    ||||||||||| |  | ||||||||||| |||||||||||| |||||||||||||| || ||||| || |||||||||    
T  1688022 tagttacaaaaatgtcattctatttaaatttaattagaatagaaacaaaagggtgttttcgtaaaatacaagtgggtg 1687945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 8434479 - 8434442
Alignment:
Q  135 ttagtaaattataagtgggtgcagtttgctaacttgca 172  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8434479 ttagtaaattataagtgggtgcagtttgctaacttgca 8434442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 34293324 - 34293365
Alignment:
Q  1 ttgtctttattacatgttttgtaccttaaacatgtcattgtc 42  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  34293324 ttgtctttattacatgttttgtaccttaagcatgtcattgtc 34293365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 142
Target Start/End: Original strand, 46798840 - 46798908
Alignment:
Q  74 aagctagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaa 142  Q
    ||||||||||||||| | || |||||||||| |||||||| ||||||| |||||| |||| ||||||||    
T  46798840 aagctagttacaaaagtgccattctatttaatattaattaaaatataatcaaaagagtgttttagtaaa 46798908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 1688098 - 1688057
Alignment:
Q  1 ttgtctttattacatgttttgtaccttaaacatgtcattgtc 42  Q
    |||||||||||||||||||||||| |||| ||||||||||||    
T  1688098 ttgtctttattacatgttttgtacattaagcatgtcattgtc 1688057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 34041954 - 34041913
Alignment:
Q  1 ttgtctttattacatgttttgtaccttaaacatgtcattgtc 42  Q
    ||||||||||||||||||| ||||||||| ||||||||||||    
T  34041954 ttgtctttattacatgtttcgtaccttaagcatgtcattgtc 34041913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 74 - 172
Target Start/End: Complemental strand, 1507497 - 1507399
Alignment:
Q  74 aagctagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaacttgca 172  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||    
T  1507497 aagctagttacaaaatttcccttctatttaaaattaattagaatataaacaaaagggtgttttagtaaattacaagtgggtgcagcttgctaacttgca 1507399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 78 - 169
Target Start/End: Complemental strand, 24790927 - 24790836
Alignment:
Q  78 tagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaactt 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||| ||||| ||||||||||    
T  24790927 tagttacaaaattacccttctatttaaaattaattagaatataaacaaaaggatgttttagtaaattaaaagtggatgcagcttgctaactt 24790836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 74 - 172
Target Start/End: Complemental strand, 9963921 - 9963827
Alignment:
Q  74 aagctagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaacttgca 172  Q
    ||||||||||||||||| |||    ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||| |||||||    
T  9963921 aagctagttacaaaattgccc----atttaaaattaattagaatataaacaaaagggtgttttagtaaattataagtaggtgcagcttgctgacttgca 9963827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 23102794 - 23102875
Alignment:
Q  74 aagctagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtg 155  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||| |||| |||| |||||||||||    
T  23102794 aagctagttacaaaattgcccttctatttaaaattaattagaatataaacaaaatgatgttttagaaaatcataagtgggtg 23102875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 166
Target Start/End: Complemental strand, 2658426 - 2658338
Alignment:
Q  78 tagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaa 166  Q
    |||||||||||||  ||||||||||||| |||||||||||| |||||||| ||||| |||||||| |||||||||||| || |||||||    
T  2658426 tagttacaaaattgtccttctatttaaatttaattagaatagaaacaaaatggtgttttagtaaaatataagtgggtgtagcttgctaa 2658338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 172
Target Start/End: Complemental strand, 10982463 - 10982365
Alignment:
Q  74 aagctagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaacttgca 172  Q
    ||||||||||| ||| | | |||||||||||||||||||||||||||| ||||||||| | ||||||||  |  ||| ||||||| ||| |||||||||    
T  10982463 aagctagttacgaaagtgctcttctatttaaaattaattagaatataatcaaaagggtattttagtaaagaactagtaggtgcagcttgttaacttgca 10982365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 172
Target Start/End: Complemental strand, 47413058 - 47412964
Alignment:
Q  78 tagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaacttgca 172  Q
    ||||||||||  ||||||||| ||||||||||||| ||||||| |||||||||||| || |||||| |  ||| ||||||| ||| |||||||||    
T  47413058 tagttacaaagctacccttctttttaaaattaatttgaatatagacaaaagggtgttttggtaaataactagtaggtgcagcttgttaacttgca 47412964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 1507570 - 1507529
Alignment:
Q  1 ttgtctttattacatgttttgtaccttaaacatgtcattgtc 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  1507570 ttgtctttattacatgttttgtaccttaaacatgtcattgtc 1507529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 9963993 - 9963952
Alignment:
Q  1 ttgtctttattacatgttttgtaccttaaacatgtcattgtc 42  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  9963993 ttgtctttattacatgttttgtaccttaagcatgtcattgtc 9963952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 33473754 - 33473815
Alignment:
Q  94 cttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtg 155  Q
    |||||||||||| |||||||||||| |||  ||| ||||| |||||||| ||||||||||||    
T  33473754 cttctatttaaatttaattagaatagaaatgaaaaggtgttttagtaaaatataagtgggtg 33473815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 154
Target Start/End: Complemental strand, 9158665 - 9158589
Alignment:
Q  78 tagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggt 154  Q
    |||||||||||||  | ||||||| ||| ||||| |||||| ||| |||| ||||| |||||||| |||||||||||    
T  9158665 tagttacaaaattgtcattctattaaaatttaatcagaatagaaagaaaatggtgttttagtaaaatataagtgggt 9158589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 2658497 - 2658463
Alignment:
Q  8 tattacatgttttgtaccttaaacatgtcattgtc 42  Q
    ||||||||||||| |||||||||||||||||||||    
T  2658497 tattacatgttttataccttaaacatgtcattgtc 2658463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 9158742 - 9158701
Alignment:
Q  1 ttgtctttattacatgttttgtaccttaaacatgtcattgtc 42  Q
    |||||| ||||||||| |||||||||||| ||||||||||||    
T  9158742 ttgtctctattacatgatttgtaccttaagcatgtcattgtc 9158701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 23102721 - 23102762
Alignment:
Q  1 ttgtctttattacatgttttgtaccttaaacatgtcattgtc 42  Q
    ||||||||||||||||||||||| ||||| ||||| ||||||    
T  23102721 ttgtctttattacatgttttgtatcttaagcatgttattgtc 23102762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 33473670 - 33473702
Alignment:
Q  10 ttacatgttttgtaccttaaacatgtcattgtc 42  Q
    |||||||||||||||||||| ||||||||||||    
T  33473670 ttacatgttttgtaccttaagcatgtcattgtc 33473702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 1566008 - 1566106
Alignment:
Q  74 aagctagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaacttgca 172  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||    
T  1566008 aagctagttacaaaattgtccttctatttaaaattaattagaatataaacaaaatggtgttttagtaaattataagtgggtgcagcttgctaacttgca 1566106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 74 - 172
Target Start/End: Complemental strand, 13474765 - 13474667
Alignment:
Q  74 aagctagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaacttgca 172  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||  |||||||||||||    
T  13474765 aagctagttacaaaattgcccttctatttaaaattaattagaatataaacaaaagggtgttctagtaaattataagtgggtgcaacttgctaacttgca 13474667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 74 - 163
Target Start/End: Original strand, 9479229 - 9479318
Alignment:
Q  74 aagctagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgc 163  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||    
T  9479229 aagctagttacaaaattgcccttctatttaaaattaattagaatataaacaaaatggtgttttagtaaattataagtgggtgcagcttgc 9479318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 85 - 172
Target Start/End: Complemental strand, 19238422 - 19238335
Alignment:
Q  85 aaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaacttgca 172  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||    
T  19238422 aaaattacccttctattaaaaattaattagaatataaacaaaatggtgttttagtaaattataagtgggtgcagcttgctaacttgca 19238335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 85 - 172
Target Start/End: Complemental strand, 19311606 - 19311519
Alignment:
Q  85 aaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaacttgca 172  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||    
T  19311606 aaaattacccttctattaaaaattaattagaatataaacaaaatggtgttttagtaaattataagtgggtgcagcttgctaacttgca 19311519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 38776495 - 38776592
Alignment:
Q  74 aagctagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaacttgca 172  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||| |||||||||||||||||||| ||| |||||||||||||    
T  38776495 aagctagttacaaaattacccttcaatttaaaattaattagaatataaac-aaagagtgttttagtaaattataagtgggtacagcttgctaacttgca 38776592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 4203314 - 4203412
Alignment:
Q  74 aagctagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaacttgca 172  Q
    |||||||| ||||||||  | ||||||||||||||||||| ||||||||||||| ||||| |||||||||||||| ||||||||  |||||||||||||    
T  4203314 aagctagtcacaaaattgtcattctatttaaaattaattaaaatataaacaaaaaggtgttttagtaaattataaatgggtgcaacttgctaacttgca 4203412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 1554281 - 1554346
Alignment:
Q  105 aattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaacttg 170  Q
    |||||||||||||||||| |||| ||||| |||||||||||||||||||||||  |||||||||||    
T  1554281 aattaattagaatataaataaaatggtgttttagtaaattataagtgggtgcaacttgctaacttg 1554346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 3469067 - 3469002
Alignment:
Q  86 aaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtg 151  Q
    ||||| |||||||||||||| |||||||||||| |||||||| ||||| |||||||| ||||||||    
T  3469067 aaattgcccttctatttaaatttaattagaatagaaacaaaaaggtgttttagtaaaatataagtg 3469002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 44374488 - 44374415
Alignment:
Q  74 aagctagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattata 147  Q
    |||||||||||||||||    |||||||||||||||||||||||||||| ||||| || | |||||||||||||    
T  44374488 aagctagttacaaaattgtatttctatttaaaattaattagaatataaaaaaaagagtattttagtaaattata 44374415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 44374561 - 44374520
Alignment:
Q  1 ttgtctttattacatgttttgtaccttaaacatgtcattgtc 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  44374561 ttgtctttattacatgttttgtaccttaaacatgtcattgtc 44374520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 166
Target Start/End: Original strand, 34347614 - 34347700
Alignment:
Q  80 gttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaa 166  Q
    |||||||||||  | ||||| ||||| |||||||||||| |||||||| ||||| ||| |||| |||||||||||| || |||||||    
T  34347614 gttacaaaattgtcattctaattaaatttaattagaatagaaacaaaatggtgttttaataaaatataagtgggtgtagcttgctaa 34347700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 1565935 - 1565976
Alignment:
Q  1 ttgtctttattacatgttttgtaccttaaacatgtcattgtc 42  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  1565935 ttgtctttattacatgttttgtaccttaagcatgtcattgtc 1565976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 8625048 - 8625089
Alignment:
Q  1 ttgtctttattacatgttttgtaccttaaacatgtcattgtc 42  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  8625048 ttgtctttattacatgttttgtaccttaagcatgtcattgtc 8625089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 13474838 - 13474797
Alignment:
Q  1 ttgtctttattacatgttttgtaccttaaacatgtcattgtc 42  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  13474838 ttgtctttattacatgttttgtaccttaagcatgtcattgtc 13474797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 38776420 - 38776461
Alignment:
Q  1 ttgtctttattacatgttttgtaccttaaacatgtcattgtc 42  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  38776420 ttgtctttattatatgttttgtaccttaaacatgtcattgtc 38776461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 42907053 - 42907118
Alignment:
Q  86 aaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtg 151  Q
    ||||| |||||| ||||||| |||||||||||| |||||||| ||||| |||||||| ||||||||    
T  42907053 aaattgcccttcaatttaaatttaattagaatagaaacaaaaaggtgttttagtaaaatataagtg 42907118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 117
Target Start/End: Original strand, 8625125 - 8625164
Alignment:
Q  78 tagttacaaaattacccttctatttaaaattaattagaat 117  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  8625125 tagttacaaaattgcccttctatttaaaattaattagaat 8625164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 155
Target Start/End: Original strand, 15540552 - 15540604
Alignment:
Q  103 aaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtg 155  Q
    ||||||||||||||| |||| |||| ||||| ||||||||||| |||||||||    
T  15540552 aaaattaattagaatgtaaataaaatggtgttttagtaaattacaagtgggtg 15540604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 40302350 - 40302405
Alignment:
Q  78 tagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgt 133  Q
    ||||||||||| ||| ||||| |||||||||||||  |||||| ||||||||||||    
T  40302350 tagttacaaaactactcttctttttaaaattaatttaaatatagacaaaagggtgt 40302405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 42443103 - 42443050
Alignment:
Q  119 taaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaacttgca 172  Q
    ||||||||| ||| | |||||||||||||| ||| ||||| |||||||||||||    
T  42443103 taaacaaaatggtattttagtaaattataaatggatgcagcttgctaacttgca 42443050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 128
Target Start/End: Complemental strand, 42443321 - 42443288
Alignment:
Q  95 ttctatttaaaattaattagaatataaacaaaag 128  Q
    |||||||| |||||||||||||||||||||||||    
T  42443321 ttctatttgaaattaattagaatataaacaaaag 42443288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 6475338 - 6475436
Alignment:
Q  74 aagctagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaacttgca 172  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| || ||||||||||    
T  6475338 aagctagttacaaaattgcccttctatttaaaattaattagaatataaacaaaagagtgttttagtaaattataagtgggtgcagcttactaacttgca 6475436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 6515464 - 6515562
Alignment:
Q  74 aagctagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaacttgca 172  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  6515464 aagctagttgcaaaattgcccttctatttaaaattaattagaatacaaacaaaagggtgttttagtaaattataagtgggtgcagcttgctaacttgca 6515562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 74 - 172
Target Start/End: Complemental strand, 6746602 - 6746504
Alignment:
Q  74 aagctagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaacttgca 172  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||    
T  6746602 aagctagttacaaaattgcccttctatttaaaattaactagaatataaacaaaagagtgttttagtaaattataagtgggtgcagcttgctaacttgca 6746504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 44682390 - 44682488
Alignment:
Q  74 aagctagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaacttgca 172  Q
    |||||||||||||||||   ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||    
T  44682390 aagctagttacaaaattgttcttctatttaaaattaattagaatataaacaaaagtgtgttttagtaaattataagtgggtgcagcttgctaacttgca 44682488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 169
Target Start/End: Original strand, 8814581 - 8814676
Alignment:
Q  74 aagctagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaactt 169  Q
    |||||||||||||||||  | ||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||| ||||||||||    
T  8814581 aagctagttacaaaattgtcattctatttaaaattaattagaatataaacaaaatggtgttttggtaaattataagtgggtgcagcttgctaactt 8814676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 77 - 172
Target Start/End: Original strand, 45713982 - 45714077
Alignment:
Q  77 ctagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaacttgca 172  Q
    ||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||  ||||| |||||||||||||    
T  45713982 ctagttacaaaattgtccttctattaaaaattaattagaatataaacaaaagggtgttttagtaaattataagtgaatgcagcttgctaacttgca 45714077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 22896687 - 22896785
Alignment:
Q  74 aagctagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaacttgca 172  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||| |||| ||||||||| || |  |||||||||||||    
T  22896687 aagctagttacaaaactacccttctatttaaaattaattagaatataaacaaaagggtattttaataaaatataagtggatgtaacttgctaacttgca 22896785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 74 - 170
Target Start/End: Complemental strand, 27077957 - 27077861
Alignment:
Q  74 aagctagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaacttg 170  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||  |||||||  |||||| ||||||| ||| |||||||    
T  27077957 aagctagttacaaaattgcctttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaacaataagtaggtgcagcttgataacttg 27077861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 74 - 170
Target Start/End: Complemental strand, 27083754 - 27083658
Alignment:
Q  74 aagctagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaacttg 170  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||  |||||||  |||||| ||||||| ||| |||||||    
T  27083754 aagctagttacaaaattgcctttctatttaaaattaattagaatataaacaaaagggtgttgtagtaaacaataagtaggtgcagcttgataacttg 27083658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 45713906 - 45713947
Alignment:
Q  1 ttgtctttattacatgttttgtaccttaaacatgtcattgtc 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  45713906 ttgtctttattacatgttttgtaccttaaacatgtcattgtc 45713947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 42370867 - 42370823
Alignment:
Q  74 aagctagttacaaaattacccttctatttaaaattaattagaata 118  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  42370867 aagctagttacaaaattgcccttctatttaaaattaattagaata 42370823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 30991849 - 30991914
Alignment:
Q  86 aaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtg 151  Q
    ||||| ||||| |||||||| |||||||||||| |||||||| ||||| |||||||| ||||||||    
T  30991849 aaattgcccttatatttaaatttaattagaatagaaacaaaaaggtgttttagtaaaatataagtg 30991914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 27065476 - 27065559
Alignment:
Q  78 tagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaa 166  Q
    |||||||||||||  |||| |||||||| |||||||||||| ||||||||||     |||||||| |||||||||||| || |||||||    
T  27065476 tagttacaaaattgtccttttatttaaatttaattagaatagaaacaaaagg-----ttagtaaaatataagtgggtgtagcttgctaa 27065559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 25891570 - 25891668
Alignment:
Q  74 aagctagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaacttgca 172  Q
    |||||||| |||||| |  | ||| |||||||||||||||||||||||| |||| || || ||||| || ||||| |||||| || ||| |||||||||    
T  25891570 aagctagtaacaaaagtgtcattcaatttaaaattaattagaatataaataaaatggagttttagtcaaatataaatgggtgtagattgttaacttgca 25891668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 46970741 - 46970670
Alignment:
Q  99 atttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaacttgca 172  Q
    |||||||||||||| ||||| |  ||||||||||| |||||||| || ||||||||| || |||||||||||||    
T  46970741 atttaaaattaatttgaataga--caaaagggtgttttagtaaaatacaagtgggtgtagcttgctaacttgca 46970670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 6515391 - 6515432
Alignment:
Q  1 ttgtctttattacatgttttgtaccttaaacatgtcattgtc 42  Q
    ||||||||||||||||||||||| ||||| ||||||||||||    
T  6515391 ttgtctttattacatgttttgtatcttaagcatgtcattgtc 6515432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 27078030 - 27077989
Alignment:
Q  1 ttgtctttattacatgttttgtaccttaaacatgtcattgtc 42  Q
    |||||||||||| |||||||||||||||| ||||||||||||    
T  27078030 ttgtctttattatatgttttgtaccttaagcatgtcattgtc 27077989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 27083827 - 27083786
Alignment:
Q  1 ttgtctttattacatgttttgtaccttaaacatgtcattgtc 42  Q
    |||||||||||| |||||||||||||||| ||||||||||||    
T  27083827 ttgtctttattatatgttttgtaccttaagcatgtcattgtc 27083786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 44682317 - 44682358
Alignment:
Q  1 ttgtctttattacatgttttgtaccttaaacatgtcattgtc 42  Q
    ||||||||||||||||||| ||||||||| ||||||||||||    
T  44682317 ttgtctttattacatgtttagtaccttaatcatgtcattgtc 44682358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 172
Target Start/End: Original strand, 31153660 - 31153751
Alignment:
Q  81 ttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaacttgca 172  Q
    ||||||||||| ||||| ||||||||| |||   |||| | || ||||||||| | |||||| || ||||||||| || |||||||||||||    
T  31153660 ttacaaaattatccttccatttaaaataaatattaatagagactaaagggtgtttcagtaaaatacaagtgggtgtagcttgctaacttgca 31153751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 42370929 - 42370888
Alignment:
Q  1 ttgtctttattacatgttttgtaccttaaacatgtcattgtc 42  Q
    |||||||||||||||||||||||| |||| ||||| ||||||    
T  42370929 ttgtctttattacatgttttgtacattaagcatgttattgtc 42370888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 30991766 - 30991806
Alignment:
Q  1 ttgtctttattacatgttttgtaccttaaacatgtcattgt 41  Q
    |||||| ||||||||||||| |||||||| |||||||||||    
T  30991766 ttgtctctattacatgttttataccttaagcatgtcattgt 30991806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 8e-33; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 74 - 161
Target Start/End: Complemental strand, 9514675 - 9514588
Alignment:
Q  74 aagctagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagttt 161  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  9514675 aagctagttacaaaattgtccttctatttaaaattaattagaatataaacaaaagggtgttttagtaaattataagtgggtacagttt 9514588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 74 - 173
Target Start/End: Original strand, 36896843 - 36896942
Alignment:
Q  74 aagctagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaacttgcaa 173  Q
    ||||| ||||||||||| | ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||    
T  36896843 aagctggttacaaaattgcacttctattttaaattaattagaatataaacaaaagggtgttttagtaaattataagtgggagcagcttgctaacttgcaa 36896942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 74 - 172
Target Start/End: Complemental strand, 28867842 - 28867744
Alignment:
Q  74 aagctagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaacttgca 172  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||| |||||  |||||||||||||    
T  28867842 aagctggttacgaaattgcccttctatttaaaattaattagaatataaacaaaaatgtgttttagtaaattataagtgagtgcatcttgctaacttgca 28867744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 18014288 - 18014223
Alignment:
Q  86 aaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtg 151  Q
    |||||||||||||||||||| |||||||||||| |||||||| ||||| |||||||| ||||||||    
T  18014288 aaattacccttctatttaaatttaattagaatagaaacaaaaaggtgttttagtaaaatataagtg 18014223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 14149140 - 14149205
Alignment:
Q  86 aaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtg 151  Q
    ||||| |||||||||||||| |||||||||||| |||||||| ||||| |||||||| ||||||||    
T  14149140 aaattgcccttctatttaaatttaattagaatagaaacaaaaaggtgttttagtaaaatataagtg 14149205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 151
Target Start/End: Complemental strand, 39057930 - 39057857
Alignment:
Q  78 tagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtg 151  Q
    ||||||| ||| | |||||||||||||| ||||||| |||  |||||||||||||| |||||||| ||||||||    
T  39057930 tagttacgaaactgcccttctatttaaatttaattaaaattgaaacaaaagggtgttttagtaaaatataagtg 39057857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 9514748 - 9514707
Alignment:
Q  1 ttgtctttattacatgttttgtaccttaaacatgtcattgtc 42  Q
    ||||||||||||||||||||||||||||| |||| |||||||    
T  9514748 ttgtctttattacatgttttgtaccttaagcatggcattgtc 9514707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 28867915 - 28867874
Alignment:
Q  1 ttgtctttattacatgttttgtaccttaaacatgtcattgtc 42  Q
    ||||||||||||||||| ||||||||||| ||||||||||||    
T  28867915 ttgtctttattacatgtattgtaccttaagcatgtcattgtc 28867874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 148
Target Start/End: Complemental strand, 26637502 - 26637428
Alignment:
Q  74 aagctagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataa 148  Q
    ||||||| ||||||| | |||| ||||| |||||||||||| ||| ||||||||| |||| ||| |||| |||||    
T  26637502 aagctagatacaaaactgccctactattaaaaattaattagtatagaaacaaaagagtgttttaataaaatataa 26637428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 36896770 - 36896811
Alignment:
Q  1 ttgtctttattacatgttttgtaccttaaacatgtcattgtc 42  Q
    ||||||||||||||||||||||| ||||| ||||| ||||||    
T  36896770 ttgtctttattacatgttttgtatcttaagcatgttattgtc 36896811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 78 - 172
Target Start/End: Complemental strand, 280450 - 280356
Alignment:
Q  78 tagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaacttgca 172  Q
    ||||||||||| | || ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||| |||||||||||||    
T  280450 tagttacaaaactgccattctatttaaaattaattagaatataaacaaaatggtgttttagtaaattataagtggatgcagcttgctaacttgca 280356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 280521 - 280486
Alignment:
Q  7 ttattacatgttttgtaccttaaacatgtcattgtc 42  Q
    |||||||||||||||||| |||||||||||||||||    
T  280521 ttattacatgttttgtactttaaacatgtcattgtc 280486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1532 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: scaffold1532
Description:

Target: scaffold1532; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 78 - 172
Target Start/End: Complemental strand, 1425 - 1331
Alignment:
Q  78 tagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtgcagtttgctaacttgca 172  Q
    |||||| |||||| ||||| ||||||||||||||||||||||||| ||||| |||| |||||||||||||||| ||||||| |||||||| ||||    
T  1425 tagttataaaattgcccttttatttaaaattaattagaatataaataaaagagtgttttagtaaattataagtaggtgcagcttgctaacctgca 1331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1532; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 1502 - 1461
Alignment:
Q  1 ttgtctttattacatgttttgtaccttaaacatgtcattgtc 42  Q
    |||||||||||| ||||||||||||||||  |||||||||||    
T  1502 ttgtctttattatatgttttgtaccttaagaatgtcattgtc 1461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 18053477 - 18053404
Alignment:
Q  74 aagctagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattata 147  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||| |||||||||||||    
T  18053477 aagctagttacaaaattgcccttctatttaaaattaattagaatataaacaaatgagtgttttagtaaattata 18053404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 13865904 - 13865945
Alignment:
Q  1 ttgtctttattacatgttttgtaccttaaacatgtcattgtc 42  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  13865904 ttgtctttattacatgttttgtaccttaagcatgtcattgtc 13865945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 18053550 - 18053509
Alignment:
Q  1 ttgtctttattacatgttttgtaccttaaacatgtcattgtc 42  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  18053550 ttgtctttattacatgttttgtaccttaagcatgtcattgtc 18053509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 172
Target Start/End: Complemental strand, 18052955 - 18052922
Alignment:
Q  139 taaattataagtgggtgcagtttgctaacttgca 172  Q
    ||||||||||||||||||||||||||||||||||    
T  18052955 taaattataagtgggtgcagtttgctaacttgca 18052922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 452777 - 452700
Alignment:
Q  78 tagttacaaaattacccttctatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtg 155  Q
    ||||||||||| | |||||||||||||| ||||||| |||| |||||||| ||||| |||||||| ||||||||||||    
T  452777 tagttacaaaactgcccttctatttaaatttaattaaaatagaaacaaaaaggtgttttagtaaaatataagtgggtg 452700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 452854 - 452814
Alignment:
Q  1 ttgtctttattacatgttttgtaccttaaacatgtcattgt 41  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  452854 ttgtctctattacatgttttgtaccttaaacatgtcattgt 452814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0778 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0778
Description:

Target: scaffold0778; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 155
Target Start/End: Original strand, 3562 - 3619
Alignment:
Q  98 tatttaaaattaattagaatataaacaaaagggtgtattagtaaattataagtgggtg 155  Q
    ||||||||||||||||||||||||||||||||| || ||||| || ||||| ||||||    
T  3562 tatttaaaattaattagaatataaacaaaagggagttttagtcaaatataaatgggtg 3619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University