View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11722_high_6 (Length: 502)
Name: NF11722_high_6
Description: NF11722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11722_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 281 - 489
Target Start/End: Complemental strand, 41330721 - 41330513
Alignment:
| Q |
281 |
cacattcatgccttcaacctagaaaaaagtaaacacagcaaactgcatttcacttctgaattgcggcatagaaacatgaaaaagtcgatgaaagccgatc |
380 |
Q |
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| T |
41330721 |
cacattcatgccttcaacctagaaaaaagtaaacacagcaaactgcatttcacttctgaattgcggcatagaaacatgaaaaagtcgatgaaagccgatc |
41330622 |
T |
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| Q |
381 |
ccagaatatttgtttcgacgtttctcgttccagcttagaaaatgatatcctcacccttgtctatcacttaaaaaacaagtggtagatgtcctgattaaaa |
480 |
Q |
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| T |
41330621 |
ccagaacatttgtttcgacgtttctcgttccggcttggaaaatgatatcctcacccttgtctatcacttaaaaaacaagtggtagatgtcctgattaaaa |
41330522 |
T |
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| Q |
481 |
gtcgcctct |
489 |
Q |
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| T |
41330521 |
gtcgcctct |
41330513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 7 - 234
Target Start/End: Complemental strand, 41330997 - 41330768
Alignment:
| Q |
7 |
aattacgcatgtaattccaaacaaaaatggattaatttgattttagt-actgtaatnnnnnnntcttgcaattgtcactttcttgttctaaagagtct-a |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
41330997 |
aattacgcatgtaattccaaacaaaaatggattaatttgattttagttactgtaataaaaaaatcttgcaattgtcactttcttgttctaaagagtctta |
41330898 |
T |
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| Q |
105 |
tcgaaatatcaaatgttaatcatttacgatttgagttgcacccatgttagaattttttcatttaaaaaagttgaagtggcaaattttagagacgtggtat |
204 |
Q |
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| T |
41330897 |
acgaaatatcaaatgttaatcatttacgatttgagttgcacccatgttagaattttttcatttaaaaaagttgaagtggcaaattttagagacgtggtat |
41330798 |
T |
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| Q |
205 |
gtgaagcgacatactttatgctatgaggat |
234 |
Q |
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| T |
41330797 |
gtgaagcgacatactttatgctatgaggat |
41330768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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