View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11722_low_10 (Length: 456)
Name: NF11722_low_10
Description: NF11722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11722_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 19 - 445
Target Start/End: Original strand, 45313108 - 45313538
Alignment:
| Q |
19 |
gaagggtatcagttctgtttgatgcatggtttaaatcattatttgctttcaaatgaaagaggaacggatatcataagtcaaaacaaggaggggattttta |
118 |
Q |
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| T |
45313108 |
gaagggtatcagttctgtttgatgcatggtttaaatcattatttgctttcaaatgaaagaggaacggatatcataagtcaaaacaaggaggggattttta |
45313207 |
T |
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| Q |
119 |
gcatatttggtaagaattgcgaccttgcgttgttcaatcatcataatacaatttcatgtctgatgcattttacttttgatacatggtatttgttacaaat |
218 |
Q |
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| T |
45313208 |
gcatatttggtaagaattgcgaccttgcgttgttcaatcatcataatacaatttcatgtctgatgcattttacttctgatacatggtatttgttacaaat |
45313307 |
T |
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| Q |
219 |
a----tctcnnnnnnncctacaggatattggggtatgtaccttattggtgttcatataggaaactatcttctctttggaagccattccactgcatttaag |
314 |
Q |
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| T |
45313308 |
atctttctttttttttcctacaggatattgggttatgtaccttattggtgttcatataggaaactatcttctctttggaagccattccactgcatttaag |
45313407 |
T |
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| Q |
315 |
agtagcagatggtttcggatgagagtttgggttctatcaatcctgttctggtaaaagaaaagcttaatccctaacttatttatccttttgaatgaagtct |
414 |
Q |
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| T |
45313408 |
agtagcagatggtttcagatgagagtttgggttctatcaatcctgttctggtaaaaggaaagcttaatccctaacttatttatccttttgaatgaagtct |
45313507 |
T |
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| Q |
415 |
acagaattaaacttgtacctttttcatgatg |
445 |
Q |
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| T |
45313508 |
acagaattaaacttatacctttttcatgatg |
45313538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 19 - 445
Target Start/End: Original strand, 27758794 - 27759217
Alignment:
| Q |
19 |
gaagggtatcagttctgtttgatgcatggtttaaatcattatttgctttcaaatgaaagaggaacggatatcataagtcaaaacaaggaggggattttta |
118 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
27758794 |
gaagggtaccagttctgtttgatgcatggtttaaatcattatttgctttcaaacgaaagaggaacagatatcataagtcaaaacaaggaggggattttta |
27758893 |
T |
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| Q |
119 |
gcatatttggtaagaattgcgaccttgcgttgttcaatcatcataatacaatttcatgtctgatgcattttacttttgatacatggtatttgttacaaat |
218 |
Q |
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| T |
27758894 |
gcatatttggtaagaattgcgaccttgcgttgttcaatcatcataatacaatttcatgtctgatgcattttacttctgatacatggtatttgttacaaac |
27758993 |
T |
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| Q |
219 |
atctcnnnnnnncctacaggatattggggtatgtaccttattggtgttcatataggaaactatcttctctttggaagccattccactgcatttaagagta |
318 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
27758994 |
atct---tttttcctacaggatattggggtatgtaccttattggtgttcaaataggaaactatcttctctttggaagccattctactgcttttaagagta |
27759090 |
T |
|
| Q |
319 |
gcagatggtttcggatgagagtttgggttctatcaatcctgttctggtaaaagaaaagcttaatccctaacttatttatccttttgaatgaagtctacag |
418 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27759091 |
gcagatgctttcggatgagagtttgggttctatcaatcctgttctggtaaaagaaaagcttaatccctaacttatttatccttttgaatgaagtctacag |
27759190 |
T |
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| Q |
419 |
aattaaacttgtacctttttcatgatg |
445 |
Q |
| |
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|||||| ||| |||||||||||||||| |
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| T |
27759191 |
aattaagcttatacctttttcatgatg |
27759217 |
T |
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