View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11722_low_11 (Length: 424)

Name: NF11722_low_11
Description: NF11722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11722_low_11
NF11722_low_11
[»] chr1 (6 HSPs)
chr1 (20-411)||(38598742-38599134)
chr1 (62-115)||(27643385-27643438)
chr1 (134-206)||(8672597-8672669)
chr1 (71-132)||(33978207-33978268)
chr1 (68-132)||(39501120-39501184)
chr1 (62-132)||(28037640-28037710)
[»] chr3 (4 HSPs)
chr3 (20-245)||(4741564-4741789)
chr3 (62-96)||(39551411-39551445)
chr3 (62-132)||(54548343-54548413)
chr3 (29-109)||(29210841-29210921)
[»] chr2 (4 HSPs)
chr2 (18-245)||(37670681-37670908)
chr2 (62-109)||(36756972-36757019)
chr2 (68-132)||(10748045-10748109)
chr2 (62-123)||(4244383-4244444)
[»] scaffold0024 (1 HSPs)
scaffold0024 (20-245)||(69028-69253)
[»] chr8 (5 HSPs)
chr8 (62-132)||(11629495-11629565)
chr8 (62-115)||(16484170-16484223)
chr8 (68-132)||(9180752-9180816)
chr8 (68-132)||(34752711-34752775)
chr8 (71-115)||(5896337-5896381)
[»] chr4 (5 HSPs)
chr4 (59-182)||(11583348-11583469)
chr4 (68-115)||(21257058-21257105)
chr4 (62-115)||(38761400-38761453)
chr4 (68-132)||(42327924-42327988)
chr4 (41-100)||(42440967-42441026)
[»] chr7 (6 HSPs)
chr7 (62-115)||(18221485-18221538)
chr7 (18-123)||(43970046-43970151)
chr7 (71-123)||(31802469-31802521)
chr7 (71-132)||(513847-513908)
chr7 (62-115)||(27745746-27745799)
chr7 (18-99)||(41605396-41605477)
[»] chr6 (1 HSPs)
chr6 (68-132)||(10158976-10159040)
[»] chr5 (2 HSPs)
chr5 (41-132)||(13020915-13021006)
chr5 (41-132)||(13092439-13092530)
[»] scaffold0996 (1 HSPs)
scaffold0996 (71-132)||(1573-1634)


Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 20 - 411
Target Start/End: Complemental strand, 38599134 - 38598742
Alignment:
Q  20 aaagtagtcggtacatcacgaaaaatatgtgggttatagttggataaagatgctctagcaatactatgagcaactttattatcttgcctcataacatatg 119  Q
    ||||||||||||||||||| ||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38599134 aaagtagtcggtacatcacaaaaaatatgggggctatagttgggtaaagatgctctagcaatactatgagcaactttattatcttgcctcctaacatatg 38599035  T
Q  120 acacatcaaagtcatttctagaaactaagagacttctacaatgagaaacaaagtcaccaaactcgttagcaagagtgaaggttgtgtggagcgcatcata 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |    
T  38599034 acacatcaaagtcatttctagaaactaagagacttctacaatgagaaacaaagtcaccaaactcgttagcaagagtgaaggttgtgtggaacgcatcaga 38598935  T
Q  220 taaaactttggaatcaatttcgaacactattacca-aaacaccataaacttgtctaattaannnnnnnnnnnnnnnnnnnaggggaaacttgtcttatta 318  Q
    |||||||||| ||||||||||||||| |||||||| ||||||||||||||||||| |||||                   ||||||||||||||||||||    
T  38598934 taaaactttgaaatcaatttcgaacagtattaccagaaacaccataaacttgtcttattaatttttatttttatttttttaggggaaacttgtcttatta 38598835  T
Q  319 atgnnnnnnnnnnnctgaacaaaagagaacctgaggccccttatcttattaatgttaatatacaataaccgtgatatttaaacaccccactct 411  Q
    |||            || |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38598834 atgtttttttttttttgtacaaaagagaacctgaggcctcttgtcttattaatgttaatatacaataaccgtgatatttaaacaccccactct 38598742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 27643385 - 27643438
Alignment:
Q  62 gataaagatgctctagcaatactatgagcaactttattatcttgcctcataaca 115  Q
    ||||| |||||||||||||||||||||||||| |||||| |||||||| |||||    
T  27643385 gataaggatgctctagcaatactatgagcaaccttattagcttgcctcttaaca 27643438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 206
Target Start/End: Complemental strand, 8672669 - 8672597
Alignment:
Q  134 tttctagaaactaagagacttctacaatgagaaacaaagtcaccaaactcgttagcaagagtgaaggttgtgt 206  Q
    |||||| ||| ||||| ||||||||||||| |||||| |||||||||||||||| ||  ||| ||||||||||    
T  8672669 tttctaaaaagtaagaaacttctacaatgaaaaacaaggtcaccaaactcgttaacagtagtaaaggttgtgt 8672597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 132
Target Start/End: Original strand, 33978207 - 33978268
Alignment:
Q  71 gctctagcaatactatgagcaactttattatcttgcctcataacatatgacacatcaaagtc 132  Q
    |||||||||||||||||||||||  ||||| ||||||||  ||||||||||||  |||||||    
T  33978207 gctctagcaatactatgagcaaccctattagcttgcctccgaacatatgacactacaaagtc 33978268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 39501184 - 39501120
Alignment:
Q  68 gatgctctagcaatactatgagcaactttattatcttgcctcataacatatgacacatcaaagtc 132  Q
    ||||||||||||||||||| ||||||| ||||  |||||||| ||||||| |||||  |||||||    
T  39501184 gatgctctagcaatactataagcaactctatttgcttgcctcctaacatacgacactacaaagtc 39501120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 132
Target Start/End: Complemental strand, 28037710 - 28037640
Alignment:
Q  62 gataaagatgctctagcaatactatgagcaactttattatcttgcctcataacatatgacacatcaaagtc 132  Q
    |||||||| |||||||| ||||||||||||||  ||||| |||||||| ||| ||| ||||| | ||||||    
T  28037710 gataaagaagctctagctatactatgagcaaccctattaacttgcctcctaatatacgacactttaaagtc 28037640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 146; Significance: 9e-77; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 20 - 245
Target Start/End: Original strand, 4741564 - 4741789
Alignment:
Q  20 aaagtagtcggtacatcacgaaaaatatgtgggttatagttggataaagatgctctagcaatactatgagcaactttattatcttgcctcataacatatg 119  Q
    ||||||||||||||||||| ||||||||| ||| ||  ||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||| |    
T  4741564 aaagtagtcggtacatcacaaaaaatatgggggctagggttggataaagatgctctagcaatactatgagcaactttattagcgtgcctcctaacatacg 4741663  T
Q  120 acacatcaaagtcatttctagaaactaagagacttctacaatgagaaacaaagtcaccaaactcgttagcaagagtgaaggttgtgtggagcgcatcata 219  Q
    ||||| ||||||  |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |  |||| ||||||||||||||| |    
T  4741664 acacaacaaagtagtttctagaaagtaagagacttctacaatgagaaacaaggtcaccaaactcgttagcaagaatagaggtggtgtggagcgcatcaga 4741763  T
Q  220 taaaactttggaatcaatttcgaaca 245  Q
    |||||||||||||||| |||||||||    
T  4741764 taaaactttggaatcagtttcgaaca 4741789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 96
Target Start/End: Complemental strand, 39551445 - 39551411
Alignment:
Q  62 gataaagatgctctagcaatactatgagcaacttt 96  Q
    ||||||||||||||||||||||||||| |||||||    
T  39551445 gataaagatgctctagcaatactatgaccaacttt 39551411  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 132
Target Start/End: Original strand, 54548343 - 54548413
Alignment:
Q  62 gataaagatgctctagcaatactatgagcaactttattatcttgcctcataacatatgacacatcaaagtc 132  Q
    ||||| || |||||||| ||||||||||||||| ||||| |||||||| ||| ||| ||||| | ||||||    
T  54548343 gataaggaagctctagctatactatgagcaactctattaacttgcctcctaatatacgacactttaaagtc 54548413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 29210841 - 29210921
Alignment:
Q  29 ggtacatcacgaaaaatatgtgggttatagttggataaagatgctctagcaatactatgagcaactttattatcttgcctc 109  Q
    |||||||||  ||||||||| ||||||   || |||||||| ||||||||||| |||||||  ||||||||  ||||||||    
T  29210841 ggtacatcataaaaaatatgggggttaggattagataaagaggctctagcaatgctatgagttactttatttgcttgcctc 29210921  T

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Target: chr2 (Bit Score: 120; Significance: 3e-61; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 37670681 - 37670908
Alignment:
Q  18 acaaagtagtcggtacatcacgaaaaatatgtgggttatagttggataaagatgctctagcaatactatgagcaactttattatcttgcctcataacata 117  Q
    ||||||||||||||||||||  ||||||||| ||| ||  || |||||||||||||||||||||||||||| ||||||||||   ||||||  |||||||    
T  37670681 acaaagtagtcggtacatcataaaaaatatgggggctagggtgggataaagatgctctagcaatactatgaacaactttatttgtttgccttctaacata 37670780  T
Q  118 tgacacatcaaagtcatttctagaaactaagagacttctacaatgagaaacaaagtcaccaaactcgttagcaagagtgaaggttgtgtggagcgcatca 217  Q
     |||||| ||||||| |||||||||| || ||||||||||||||||||| ||| ||||||  ||||||||||||||||  |||| |||||||||||||||    
T  37670781 cgacacaacaaagtcgtttctagaaagtacgagacttctacaatgagaagcaatgtcaccttactcgttagcaagagtagaggtggtgtggagcgcatca 37670880  T
Q  218 tataaaactttggaatcaatttcgaaca 245  Q
     ||||||||||||||||| |||||||||    
T  37670881 aataaaactttggaatcagtttcgaaca 37670908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 36756972 - 36757019
Alignment:
Q  62 gataaagatgctctagcaatactatgagcaactttattatcttgcctc 109  Q
    ||||| || |||||||||||||||||||||||||||||| ||||||||    
T  36756972 gataaggaagctctagcaatactatgagcaactttattagcttgcctc 36757019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 10748109 - 10748045
Alignment:
Q  68 gatgctctagcaatactatgagcaactttattatcttgcctcataacatatgacacatcaaagtc 132  Q
    ||||||||||||||| ||||||||||| ||||  |||||||| ||||||| |||||  |||||||    
T  10748109 gatgctctagcaatattatgagcaactctatttgcttgcctcctaacatacgacactacaaagtc 10748045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 4244444 - 4244383
Alignment:
Q  62 gataaagatgctctagcaatactatgagcaactttattatcttgcctcataacatatgacac 123  Q
    ||||||||||||||||| |||||||||||| || ||||  |||||||| ||| | |||||||    
T  4244444 gataaagatgctctagctatactatgagcagctctatttgcttgcctcttaataaatgacac 4244383  T

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Target: scaffold0024 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 245
Target Start/End: Original strand, 69028 - 69253
Alignment:
Q  20 aaagtagtcggtacatcacgaaaaatatgtgggttatagttggataaagatgctctagcaatactatgagcaactttattatcttgcctcataacatatg 119  Q
    |||||| |||||||||||  |||||||||  || ||| || | ||||||| |||||||| ||||||||||||||||||||  |||| ||| ||||| | |    
T  69028 aaagtaatcggtacatcataaaaaatatggaggctatggtggaataaagacgctctagcgatactatgagcaactttatttgcttgtctcctaacacacg 69127  T
Q  120 acacatcaaagtcatttctagaaactaagagacttctacaatgagaaacaaagtcaccaaactcgttagcaagagtgaaggttgtgtggagcgcatcata 219  Q
    ||||| ||||| | |||||||||| ||| |||||||||||||||||||| |  |||||||||||||||| ||||||  |    || | |||||||||| |    
T  69128 acacaacaaagccgtttctagaaagtaaaagacttctacaatgagaaactagttcaccaaactcgttagtaagagtagacaaggtatcgagcgcatcaga 69227  T
Q  220 taaaactttggaatcaatttcgaaca 245  Q
    |||||||||||||||| |||||||||    
T  69228 taaaactttggaatcagtttcgaaca 69253  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 62 - 132
Target Start/End: Complemental strand, 11629565 - 11629495
Alignment:
Q  62 gataaagatgctctagcaatactatgagcaactttattatcttgcctcataacatatgacacatcaaagtc 132  Q
    ||||| ||||||||||||||||||||||||||| ||||  |||||||| ||||||| |||||  |||||||    
T  11629565 gataatgatgctctagcaatactatgagcaactctatttgcttgcctcctaacatacgacactacaaagtc 11629495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 16484170 - 16484223
Alignment:
Q  62 gataaagatgctctagcaatactatgagcaactttattatcttgcctcataaca 115  Q
    ||||| |||||||||||||||||||||||||| |||||| |||||||| |||||    
T  16484170 gataaggatgctctagcaatactatgagcaaccttattagcttgcctcttaaca 16484223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 9180752 - 9180816
Alignment:
Q  68 gatgctctagcaatactatgagcaactttattatcttgcctcataacatatgacacatcaaagtc 132  Q
    ||||||||||||||| ||||||||||| ||||  |||||||| ||||||| |||||  |||||||    
T  9180752 gatgctctagcaatattatgagcaactctatttgcttgcctcctaacatacgacactacaaagtc 9180816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 34752711 - 34752775
Alignment:
Q  68 gatgctctagcaatactatgagcaactttattatcttgcctcataacatatgacacatcaaagtc 132  Q
    ||||||||||||||||||||||||| | ||||  |||||||| ||||||| |||||  |||||||    
T  34752711 gatgctctagcaatactatgagcaattctatttgcttgcctcctaacatacgacactacaaagtc 34752775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 5896337 - 5896381
Alignment:
Q  71 gctctagcaatactatgagcaactttattatcttgcctcataaca 115  Q
    |||||||||||||||||||| ||| |||| ||||||||| |||||    
T  5896337 gctctagcaatactatgagctactatattttcttgcctcctaaca 5896381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 182
Target Start/End: Original strand, 11583348 - 11583469
Alignment:
Q  59 ttggataaagatgctctagcaatactatgagcaactttattatcttgcctcataacatatgacacatcaaagtcatttctagaaactaagagacttctac 158  Q
    |||||||||||||||| ||  |||||||||  ||||||||||  ||| ||  ||||||| ||||||  ||| || ||| |||||| ||||||||||||||    
T  11583348 ttggataaagatgctcgag--atactatgaataactttattagtttgtcttctaacatacgacacaataaaatcgtttttagaaattaagagacttctac 11583445  T
Q  159 aatgagaaacaaagtcaccaaact 182  Q
    ||| | |||||| |||| ||||||    
T  11583446 aatcaaaaacaaggtcatcaaact 11583469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 21257105 - 21257058
Alignment:
Q  68 gatgctctagcaatactatgagcaactttattatcttgcctcataaca 115  Q
    |||||||||||||||||||||||||| |||||| |||||||| |||||    
T  21257105 gatgctctagcaatactatgagcaaccttattagcttgcctcttaaca 21257058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 38761400 - 38761453
Alignment:
Q  62 gataaagatgctctagcaatactatgagcaactttattatcttgcctcataaca 115  Q
    ||||| |||||||||||||||||||||||||| |||||| ||||| || |||||    
T  38761400 gataaggatgctctagcaatactatgagcaaccttattagcttgcttcttaaca 38761453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 42327924 - 42327988
Alignment:
Q  68 gatgctctagcaatactatgagcaactttattatcttgcctcataacatatgacacatcaaagtc 132  Q
    ||||||||||||||| ||||||||||| ||||  |||||||| ||||||| |||||  |||||||    
T  42327924 gatgctctagcaatattatgagcaactctatttgcttgcctcctaacatacgacactacaaagtc 42327988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 42440967 - 42441026
Alignment:
Q  41 aaaatatgtgggttatagttggataaagatgctctagcaatactatgagcaactttatta 100  Q
    |||||||| ||||||  ||  ||||||||||||||||||| | |||||||||||||||||    
T  42440967 aaaatatgggggttaatgtgagataaagatgctctagcaacagtatgagcaactttatta 42441026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 18221485 - 18221538
Alignment:
Q  62 gataaagatgctctagcaatactatgagcaactttattatcttgcctcataaca 115  Q
    ||||| ||||||||||||||| |||||||||| |||||| |||||||| |||||    
T  18221485 gataaggatgctctagcaatagtatgagcaaccttattagcttgcctcttaaca 18221538  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 43970151 - 43970046
Alignment:
Q  18 acaaagtagtcggtacatcacgaaaaatatgtgggttatagttggataaagatgctctagcaatactatgagcaactttattatcttgcctcataacata 117  Q
    |||||||||  |||||||||   |||||||| ||| ||   |||||||| || ||||||||||||||||||||||| |||||  |||||||   ||||||    
T  43970151 acaaagtagatggtacatcatagaaaatatgggggctaggattggataaggacgctctagcaatactatgagcaaccttatttgcttgcctacgaacata 43970052  T
Q  118 tgacac 123  Q
    ||||||    
T  43970051 tgacac 43970046  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 31802521 - 31802469
Alignment:
Q  71 gctctagcaatactatgagcaactttattatcttgcctcataacatatgacac 123  Q
    ||||||||||||||||||||||| |||||| ||||||||  |||||| |||||    
T  31802521 gctctagcaatactatgagcaaccttattagcttgcctccgaacatacgacac 31802469  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 513908 - 513847
Alignment:
Q  71 gctctagcaatactatgagcaactttattatcttgcctcataacatatgacacatcaaagtc 132  Q
    |||||||||||||||||||||||  ||||| ||||||||  |||||| |||||  |||||||    
T  513908 gctctagcaatactatgagcaaccctattagcttgcctccaaacatacgacactacaaagtc 513847  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 27745746 - 27745799
Alignment:
Q  62 gataaagatgctctagcaatactatgagcaactttattatcttgcctcataaca 115  Q
    ||||| ||||||||||| |||||||||||||| |||||| ||| |||| |||||    
T  27745746 gataaggatgctctagcgatactatgagcaaccttattagcttacctcttaaca 27745799  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 41605477 - 41605396
Alignment:
Q  18 acaaagtagtcggtacatcacgaaaaatatgtgggttatagttggataaagatgctctagcaatactatgagcaactttatt 99  Q
    |||||||||  ||||||| |  ||||||||| |||||    |||||||| || ||||||||||||||||||||||| |||||    
T  41605477 acaaagtagatggtacattataaaaaatatgggggttgagattggataaggacgctctagcaatactatgagcaaccttatt 41605396  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 10158976 - 10159040
Alignment:
Q  68 gatgctctagcaatactatgagcaactttattatcttgcctcataacatatgacacatcaaagtc 132  Q
    ||||||||||||||| ||||||||||| ||||  |||||||| ||||||| |||||  |||||||    
T  10158976 gatgctctagcaatattatgagcaactctatttgcttgcctcctaacatacgacactacaaagtc 10159040  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 132
Target Start/End: Original strand, 13020915 - 13021006
Alignment:
Q  41 aaaatatgtgggttatagttggataaagatgctctagcaatactatgagcaactttattatcttgcctcataacatatgacacatcaaagtc 132  Q
    |||||||| ||||||   |||||||| || |||||||||||||||| |||||| |||||  ||||||||  |||||| |||||  |||||||    
T  13020915 aaaatatgggggttaggattggataaggacgctctagcaatactataagcaaccttatttgcttgcctccgaacatacgacactacaaagtc 13021006  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 132
Target Start/End: Original strand, 13092439 - 13092530
Alignment:
Q  41 aaaatatgtgggttatagttggataaagatgctctagcaatactatgagcaactttattatcttgcctcataacatatgacacatcaaagtc 132  Q
    |||||||| ||||||   |||||||| || |||||||||||||||| |||||| |||||  ||||||||  |||||| |||||  |||||||    
T  13092439 aaaatatgggggttaggattggataacgacgctctagcaatactataagcaaccttatttgcttgcctccgaacatacgacactacaaagtc 13092530  T

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Target: scaffold0996 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 132
Target Start/End: Original strand, 1573 - 1634
Alignment:
Q  71 gctctagcaatactatgagcaactttattatcttgcctcataacatatgacacatcaaagtc 132  Q
    |||||||||||||||||||||||  ||||| ||||||||  |||||| |||||  |||||||    
T  1573 gctctagcaatactatgagcaaccctattagcttgcctccgaacatacgacactacaaagtc 1634  T

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