View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11722_low_13 (Length: 335)
Name: NF11722_low_13
Description: NF11722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11722_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 81 - 320
Target Start/End: Complemental strand, 18979715 - 18979477
Alignment:
| Q |
81 |
gatcataatctcgattttgaataatctctatcgttgatttgagatcggacaaccaagattagtaattgtgtcgcacacttattgcacggtgatccaaatt |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
18979715 |
gatcataatctcgattttgaataatctctatcgttgatttgagatcggacaaccaagatcagtaactgtgtcgcacacttattgcgcggtgatccaaatt |
18979616 |
T |
|
| Q |
181 |
aaaagactgatacatttcgattaaagggacacaattttgttctttttctattatgtccatgtctcgaatataatcatataccaggttagtggtaataatt |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
18979615 |
aaaagactgatacatttcgattaaagggacacaattttattc-ttttctattatgtccatgtcttaaatataatcatataccaggttagtggtaatgatt |
18979517 |
T |
|
| Q |
281 |
ttgaaacaaaaaatgtaagaaaaataatattcgtataatt |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18979516 |
ttgaaacaaaaaatgtaagaaaaataatattcgtataatt |
18979477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 18979758 - 18979704
Alignment:
| Q |
15 |
atgaaaccaccaaacaataggtattggtaaatacgaaaactaagatcataatctc |
69 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
18979758 |
atgagaccaccaaacaataggtattggttaatacaaaaactaagatcataatctc |
18979704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University