View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11722_low_14 (Length: 333)
Name: NF11722_low_14
Description: NF11722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11722_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 7427552 - 7427822
Alignment:
| Q |
19 |
aatcgagagcaaagtagcattttttgttttcaaccaccaaaacgaaaggaacttaattttctctaacaattgttgcagttgttgttccttatgattaaat |
118 |
Q |
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| T |
7427552 |
aatcaagagcaaagtagcactttttgttatcaaacaccaaaacgaaaggagtttaattttctctaacaattgttgcggttgttgttccttaggattaaat |
7427651 |
T |
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| Q |
119 |
attatgttatttctttcttttcagattacccaaacgcatgcaaaccaaattaaccgtaaagaagaccgtacaaattttgagaatccacccgtctgactgg |
218 |
Q |
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| T |
7427652 |
attatgttatttctttcttttcagattacccaaacacatgcaaaccaaattaattgtaaagaagaccgtacaaattttgagaatccacccgtctgaccgg |
7427751 |
T |
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| Q |
219 |
attaagaaagtcatccgataaatgaaatgagtcaaccattaagataccaaataatgtcgaagtaattacaa |
289 |
Q |
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| T |
7427752 |
attaagaaagtcatccgataaatgaaatgagtcaaccattaagataccaaataatgtcgaagtaattacaa |
7427822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 323
Target Start/End: Original strand, 7428332 - 7428368
Alignment:
| Q |
287 |
caaaaatatattgtcgtttcctggtcacttacctttg |
323 |
Q |
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| T |
7428332 |
caaaaacatattgtcgtttcctggtcacttacctttg |
7428368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 3394907 - 3394859
Alignment:
| Q |
124 |
gttatttctttcttttcagattacccaaacgcatgcaaaccaaattaac |
172 |
Q |
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| T |
3394907 |
gttatttctttcttttcaaattacccaaactaaagcaagccaaattaac |
3394859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 33330474 - 33330425
Alignment:
| Q |
124 |
gttatttctttcttttcagattacccaaacgcatgcaaaccaaattaacc |
173 |
Q |
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| T |
33330474 |
gttatttctttctttccatattacccaaacacaagcaagccaaattaacc |
33330425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 21430912 - 21430957
Alignment:
| Q |
126 |
tatttctttcttttcagattacccaaacgcatgcaaaccaaattaa |
171 |
Q |
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| T |
21430912 |
tatttttttctttccaaattacccaaacacatgcaaaccaaattaa |
21430957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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