View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11722_low_2 (Length: 884)
Name: NF11722_low_2
Description: NF11722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11722_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 712; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 712; E-Value: 0
Query Start/End: Original strand, 128 - 866
Target Start/End: Original strand, 9957385 - 9958121
Alignment:
| Q |
128 |
atgtggtaagatgatgaaatctgattaaatgtctcactaaaactaaaacactacaatatttttccatattagtgtttcctttttatcttcatgtttcaaa |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9957385 |
atgtggtaagatgatgaaatctgattaaatgtctcactaaaactaaaacactacaatatttttccacattagtgtttcctttttatcttcatgtttcaaa |
9957484 |
T |
|
| Q |
228 |
tgaacatattcaagtagatttatccgttaattttaattttgcagagttctggaaaatcttcagtgttggagagtattgttggaaaggatttcttacctcg |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9957485 |
tgaacatattcaagtagatttatccgttaattttaattttgcagagttctggaaaatcttcagtgttggagagtattgttggaaaggatttcttacctcg |
9957584 |
T |
|
| Q |
328 |
tggatccggtaatttaatttgctaattgatgtatatatatatgtgtatgtgtttacttagtcatgtactgtacagctttatggtttgcttctcctctttc |
427 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9957585 |
tggatccggtaatttaatttgctaattgatgtatatatac--gtgtatgtgtttacttagtcatgtactgtacagctttatggtttgcttctcctctttc |
9957682 |
T |
|
| Q |
428 |
tcgctctccatgatacgagttttggataacttaaccccgtttctgtatgcagggattgttactcgacgtcctcttgttttgcagcttcacaagattgatg |
527 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9957683 |
tcgctctccatgatacgagttttggataacttaaccccgtttctgtatgcagggattgttactcgacgtcctcttgttttgcagcttcacaagattgatg |
9957782 |
T |
|
| Q |
528 |
aagggagagaatatgctgaatttatgcatgctccaaggaaaagatttactgattttggtattctcatacataaaagatttcctttcactcactttatggt |
627 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9957783 |
aagggagagaatatgctgaatttatgcatgctccaaggaaaagatttactgattttggtattctcatacataaaagatttcctttcactcactttatggt |
9957882 |
T |
|
| Q |
628 |
tttacttacattacacttaatacctttaaggtatagcgaaaactaactagtaacttcatccatttttcgttaaaacaaatgttgcgtactggaaatgtta |
727 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
9957883 |
tttacttacattacacttaatacctttaaggtatagcgaaaactaactagtaacttcatccatttttggttaaaacaaatgttgcgtaccggaaatgtta |
9957982 |
T |
|
| Q |
728 |
ttatatttgcattttctttaatattctttactgctattgtttctccggtagctactaatttcgcctgttttgtagctgctgttaggcaggagatctctga |
827 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9957983 |
ttatatttgcattttctttaatattctttactgctattgtttctccggtagctactaatttcgcctgttttgtagctgctgttaggcaggagatctctga |
9958082 |
T |
|
| Q |
828 |
tgagactgatagagaaacaggtcgctccaagggtatttc |
866 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9958083 |
tgagactgatagagaaacaggtcgctccaagggtatttc |
9958121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 9957258 - 9957316
Alignment:
| Q |
1 |
tgagatgaatcaacttcttttgagtttaacaaatacatttccagcgtaaacaatactta |
59 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9957258 |
tgagatgaatcaacttcttttgagtttaacaaatacatttccagcgtaaacaatactta |
9957316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 269 - 338
Target Start/End: Original strand, 42037393 - 42037462
Alignment:
| Q |
269 |
cagagttctggaaaatcttcagtgttggagagtattgttggaaaggatttcttacctcgtggatccggta |
338 |
Q |
| |
|
||||||||||||||||| || || ||||||||| |||| || || |||||||||||||||||||| |||| |
|
|
| T |
42037393 |
cagagttctggaaaatcctccgtattggagagtgttgtcggcaaagatttcttacctcgtggatcaggta |
42037462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 497 - 531
Target Start/End: Complemental strand, 2123129 - 2123095
Alignment:
| Q |
497 |
cctcttgttttgcagcttcacaagattgatgaagg |
531 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
|
|
| T |
2123129 |
cctcttgttttgcagcttcaaaagattgatgaagg |
2123095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University