View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11722_low_4 (Length: 626)
Name: NF11722_low_4
Description: NF11722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11722_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 365 - 595
Target Start/End: Complemental strand, 31793531 - 31793301
Alignment:
| Q |
365 |
gtgcattttaaaatttgctttcaaatgtatgcatcatgttatgttacgtgaatatatgatatgttagaatgcatatttgaatttgtgattttcaactttt |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31793531 |
gtgcattttaaaatttgctttcaaatgtatgcatcatgttatgttacgtgaagatatgatatgttagaatgcagatttgaatttgtgattttcaactttt |
31793432 |
T |
|
| Q |
465 |
ctatggttgtataataaaataatatttgttttagaaattacaatatataagtgtggttgagatgattgcttttattatattattctgagtggagtattat |
564 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31793431 |
ctatggttgtataataaaataatatttgttttagaaataacaatatataagtgtggttgagatgattgtttttattatattattctgagtggagtattat |
31793332 |
T |
|
| Q |
565 |
tgttttaattgacaaataagagtttaattaa |
595 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |
|
|
| T |
31793331 |
tgttttaattgacaaacaagagtttaattaa |
31793301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 123 - 284
Target Start/End: Complemental strand, 31793780 - 31793612
Alignment:
| Q |
123 |
gtggtattgatatcggagttagtgctggtataggtcgtcgtc------gtggaggtagtgctgcttcttcttcatctcgttttgcaggtagtgatgttac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| || | || || || ||||||||| | ||||||||||||| |
|
|
| T |
31793780 |
gtggtattgatatcggagttagtgctggtataggtcgtcgtcctggtcgtggaggtagtggtgttgctgctacaactcgttttggacgtagtgatgttac |
31793681 |
T |
|
| Q |
217 |
taaagcaggaagcactcatcaacaagaatatgtaccatgagatctataagcttt-atatggatgcatgc |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31793680 |
taaagcaggaagcactcatcaacaagaatatgtaccatgagatctataagctttaatatggatgcatgc |
31793612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 31793858 - 31793775
Alignment:
| Q |
15 |
cagagacgaggattaggtatggaataactcgttctgaagatagtggtgttgctgaaacaaacggtattgcgggagatagtggta |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
31793858 |
cagagacgaggattaggtatggaataactcgttcggtagatagtggtgttgctaaaacaaatggtattgcgggagatagtggta |
31793775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University