View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11722_low_5 (Length: 509)
Name: NF11722_low_5
Description: NF11722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11722_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 116; Significance: 9e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 210 - 365
Target Start/End: Complemental strand, 3225908 - 3225752
Alignment:
| Q |
210 |
tgagtctcacgtttacaaattagtcattttataaataaacatccaataatataacccaacaccctaaaaaatgattaaacaggtcataacaataactttg |
309 |
Q |
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| T |
3225908 |
tgagtctcacgtttacaaattagtcattttataaataaacatccaatcatataacccaacaccctaaaaaatgattaaacaggtcataacaataactctg |
3225809 |
T |
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| Q |
310 |
ta-nnnnnnngttgaagaaacaaaaactctatacgattaaattgcaacaataattca |
365 |
Q |
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| T |
3225808 |
tattttttttgttgaagaaacaaaaactctatatgattaaattgcaacaataattca |
3225752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 105 - 183
Target Start/End: Complemental strand, 3226069 - 3225991
Alignment:
| Q |
105 |
ttataaaattatgacaaagtaaacaatatataactatagaagggataaaagtgtaaagaagtgaaaattgtaatatctt |
183 |
Q |
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| T |
3226069 |
ttataaaattacgacaaagtaaacaatatataactatagaagggataaaactgtaaataagtgaaaattgtaatatctt |
3225991 |
T |
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