View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11722_low_6 (Length: 504)

Name: NF11722_low_6
Description: NF11722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11722_low_6
NF11722_low_6
[»] chr5 (12 HSPs)
chr5 (1-490)||(10045812-10046301)
chr5 (327-488)||(10866248-10866409)
chr5 (327-488)||(10873896-10874057)
chr5 (327-488)||(10878967-10879128)
chr5 (327-488)||(10884038-10884199)
chr5 (327-488)||(39675821-39675982)
chr5 (334-488)||(10887972-10888126)
chr5 (1-167)||(39676079-39676245)
chr5 (1-167)||(10866515-10866681)
chr5 (1-167)||(10873624-10873790)
chr5 (1-167)||(10878695-10878861)
chr5 (1-167)||(10883766-10883932)
[»] chr8 (1 HSPs)
chr8 (439-490)||(30710110-30710161)


Alignment Details
Target: chr5 (Bit Score: 466; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Complemental strand, 10046301 - 10045812
Alignment:
Q  1 tcaaaaccttccattggtaaacccgagagtgactttccggtaactctctccaccgcttggttacgtatcgccgccgcacgtttgcaatctccgagttttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10046301 tcaaaaccttccattggtaaacccgagagtgactttccggtaactctctccaccgcttggttacgtatcgccgccgcacgtttgcaatctccgagttttg 10046202  T
Q  101 attcaagcgagtatgaaggaattgtaccggttacaaccgcacggacaacctcgtcatcttccatggaaagtagcaccggtgccggcaaattcgccggaac 200  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10046201 attcaagcgagtatgacggaattgtaccggttaccaccgcacggacaacctcgtcatcttccatggaaagtagcaccggtgccggcaaattcgccggaac 10046102  T
Q  201 aactttttctacggggattttcggaggtagcttctgtgcgactccggcgaggcatgaaccggagtttttcgcaatgtcggattcatcttcttcgtcgtat 300  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10046101 aactttttcaacggggattctcggaggtagcttctgtgcgactccggcgaggcatgaaccggagtttttcgcaatgtcggattcatcttcttcgtcgtat 10046002  T
Q  301 tgaacagcgcgagaagcggcgaaaggatgaagaatgaagccaatgccgaagaaagccataaggtaaataaaggaagctatgagggaaacaacaccggcaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10046001 tgaacagcgcgagaagcggcgaaaggatgaagaatgaagccaatgccgaagaaagccataaggtaaataaaggaagctatgagggaaacaacaccggcaa 10045902  T
Q  401 tctcagagattgtgagaacatgaagaggtgtggaggttcggatcttctcacgccaccggtgaagaagaaaatacgcgacagagaagaaaa 490  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  10045901 tctcagagattgtgagaacatgaagaggtgtggaggttcggatcttctcacgccacctgtgaagaagaaaatacgcgacggagaagaaaa 10045812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 327 - 488
Target Start/End: Complemental strand, 10866409 - 10866248
Alignment:
Q  327 atgaagaatgaagccaatgccgaagaaagccataaggtaaataaaggaagctatgagggaaacaacaccggcaatctcagagattgtgagaacatgaaga 426  Q
    |||||| |||||| |||||||||||||||  |||||||| | ||||||||| ||||||||||||| | ||  |||||||||||||||||| || || |||    
T  10866409 atgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggaga 10866310  T
Q  427 ggtgtggaggttcggatcttctcacgccaccggtgaagaagaaaatacgcgacagagaagaa 488  Q
    ||||| |||||||||||||| |||||||||| ||  |||||||| || ||||| ||||||||    
T  10866309 ggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaa 10866248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 327 - 488
Target Start/End: Original strand, 10873896 - 10874057
Alignment:
Q  327 atgaagaatgaagccaatgccgaagaaagccataaggtaaataaaggaagctatgagggaaacaacaccggcaatctcagagattgtgagaacatgaaga 426  Q
    |||||| |||||| |||||||||||||||  |||||||| | ||||||||| ||||||||||||| | ||  |||||||||||||||||| || || |||    
T  10873896 atgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggaga 10873995  T
Q  427 ggtgtggaggttcggatcttctcacgccaccggtgaagaagaaaatacgcgacagagaagaa 488  Q
    ||||| |||||||||||||| |||||||||| ||  |||||||| || ||||| ||||||||    
T  10873996 ggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaa 10874057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 327 - 488
Target Start/End: Original strand, 10878967 - 10879128
Alignment:
Q  327 atgaagaatgaagccaatgccgaagaaagccataaggtaaataaaggaagctatgagggaaacaacaccggcaatctcagagattgtgagaacatgaaga 426  Q
    |||||| |||||| |||||||||||||||  |||||||| | ||||||||| ||||||||||||| | ||  |||||||||||||||||| || || |||    
T  10878967 atgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggaga 10879066  T
Q  427 ggtgtggaggttcggatcttctcacgccaccggtgaagaagaaaatacgcgacagagaagaa 488  Q
    ||||| |||||||||||||| |||||||||| ||  |||||||| || ||||| ||||||||    
T  10879067 ggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaa 10879128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 327 - 488
Target Start/End: Original strand, 10884038 - 10884199
Alignment:
Q  327 atgaagaatgaagccaatgccgaagaaagccataaggtaaataaaggaagctatgagggaaacaacaccggcaatctcagagattgtgagaacatgaaga 426  Q
    |||||| |||||| |||||||||||||||  |||||||| | ||||||||| ||||||||||||| | ||  |||||||||||||||||| || || |||    
T  10884038 atgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggaga 10884137  T
Q  427 ggtgtggaggttcggatcttctcacgccaccggtgaagaagaaaatacgcgacagagaagaa 488  Q
    ||||| |||||||||||||| |||||||||| ||  |||||||| || ||||| ||||||||    
T  10884138 ggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaa 10884199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 327 - 488
Target Start/End: Complemental strand, 39675982 - 39675821
Alignment:
Q  327 atgaagaatgaagccaatgccgaagaaagccataaggtaaataaaggaagctatgagggaaacaacaccggcaatctcagagattgtgagaacatgaaga 426  Q
    |||||| |||||| ||| ||| ||||||||| ||||||| |||| | |||| ||||||||||| | | |   |||||| ||||||||||| ||||| |||    
T  39675982 atgaaggatgaaggcaacgccaaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggagattgtgaggacatggaga 39675883  T
Q  427 ggtgtggaggttcggatcttctcacgccaccggtgaagaagaaaatacgcgacagagaagaa 488  Q
    ||||| |||||||||||||| ||||||||||||| ||||||||| || ||||| ||||||||    
T  39675882 ggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaa 39675821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 334 - 488
Target Start/End: Original strand, 10887972 - 10888126
Alignment:
Q  334 atgaagccaatgccgaagaaagccataaggtaaataaaggaagctatgagggaaacaacaccggcaatctcagagattgtgagaacatgaagaggtgtgg 433  Q
    |||||| || ||||||||||||| |||||||| |  |||||||| ||||||||||| ||| |  |||||||||||| |||||| |  || |||||||| |    
T  10887972 atgaaggcagtgccgaagaaagcaataaggtagacgaaggaagcgatgagggaaactacagcaacaatctcagagactgtgaggatgtggagaggtgtag 10888071  T
Q  434 aggttcggatcttctcacgccaccggtgaagaagaaaatacgcgacagagaagaa 488  Q
    ||||||||||||| |||||||||| || ||||||||| |||||| | ||||||||    
T  10888072 aggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaa 10888126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 39676245 - 39676079
Alignment:
Q  1 tcaaaaccttccattggtaaacccgagagtgactttccggtaactctctccaccgcttggttacgtatcgccgccgcacgtttgcaatctccgagttttg 100  Q
    |||||||||||||||||||||||    |||||| |||| |||||||||||||| |||||||| |  ||| | || ||||||  ||||||||| || || |    
T  39676245 tcaaaaccttccattggtaaaccttcaagtgaccttccagtaactctctccacagcttggttcctaatcacagcagcacgtcggcaatctccaagcttcg 39676146  T
Q  101 attcaagcgagtatgaaggaattgtaccggttacaaccgcacggacaacctcgtcatcttccatgga 167  Q
    ||||||||||||| || |||||||  || |  || || ||||  |||||||| ||||||||||||||    
T  39676145 attcaagcgagtaagatggaattgatccagacaccactgcaccaacaacctcctcatcttccatgga 39676079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 10866681 - 10866515
Alignment:
Q  1 tcaaaaccttccattggtaaacccgagagtgactttccggtaactctctccaccgcttggttacgtatcgccgccgcacgtttgcaatctccgagttttg 100  Q
    |||||||||||||| ||||||||    |||||| |||||||||||||||||||||||||||| |  ||    || ||||||  ||||||||| || || |    
T  10866681 tcaaaaccttccatcggtaaaccttcaagtgaccttccggtaactctctccaccgcttggttcctaatatttgctgcacgtcggcaatctccaagcttgg 10866582  T
Q  101 attcaagcgagtatgaaggaattgtaccggttacaaccgcacggacaacctcgtcatcttccatgga 167  Q
    ||||||||||||| || |||||||  || |  || || |||| ||||||||| || |||||||||||    
T  10866581 attcaagcgagtaagatggaattgatcctgacaccactgcactgacaacctcctcgtcttccatgga 10866515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 10873624 - 10873790
Alignment:
Q  1 tcaaaaccttccattggtaaacccgagagtgactttccggtaactctctccaccgcttggttacgtatcgccgccgcacgtttgcaatctccgagttttg 100  Q
    |||||||||||||| ||||||||    |||||| ||||||||||||||||||| |||||||| |  ||    || ||||||  ||||||||| || || |    
T  10873624 tcaaaaccttccatcggtaaaccttcaagtgaccttccggtaactctctccacggcttggttcctaatatttgctgcacgtcggcaatctccaagcttgg 10873723  T
Q  101 attcaagcgagtatgaaggaattgtaccggttacaaccgcacggacaacctcgtcatcttccatgga 167  Q
    ||||||||||||| || |||||||  || |  || || |||| ||||||||| || |||||||||||    
T  10873724 attcaagcgagtaagatggaattgatcctgacaccactgcactgacaacctcctcgtcttccatgga 10873790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 10878695 - 10878861
Alignment:
Q  1 tcaaaaccttccattggtaaacccgagagtgactttccggtaactctctccaccgcttggttacgtatcgccgccgcacgtttgcaatctccgagttttg 100  Q
    |||||||||||||| ||||||||    |||||| ||||||||||||||||||| |||||||| |  ||    || ||||||  ||||||||| || || |    
T  10878695 tcaaaaccttccatcggtaaaccttcaagtgaccttccggtaactctctccacggcttggttcctaatatttgctgcacgtcggcaatctccaagcttgg 10878794  T
Q  101 attcaagcgagtatgaaggaattgtaccggttacaaccgcacggacaacctcgtcatcttccatgga 167  Q
    ||||||||||||| || |||||||  || |  || || |||| ||||||||| || |||||||||||    
T  10878795 attcaagcgagtaagatggaattgatcctgacaccactgcactgacaacctcctcgtcttccatgga 10878861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 10883766 - 10883932
Alignment:
Q  1 tcaaaaccttccattggtaaacccgagagtgactttccggtaactctctccaccgcttggttacgtatcgccgccgcacgtttgcaatctccgagttttg 100  Q
    |||||||||||||| ||||||||    |||||| ||||||||||||||||||| |||||||| |  ||    || ||||||  ||||||||| || || |    
T  10883766 tcaaaaccttccatcggtaaaccttcaagtgaccttccggtaactctctccacggcttggttcctaatatttgctgcacgtcggcaatctccaagcttgg 10883865  T
Q  101 attcaagcgagtatgaaggaattgtaccggttacaaccgcacggacaacctcgtcatcttccatgga 167  Q
    ||||||||||||| || |||||||  || |  || || |||| ||||||||| || |||||||||||    
T  10883866 attcaagcgagtaagatggaattgatcctgacaccactgcactgacaacctcctcgtcttccatgga 10883932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 490
Target Start/End: Original strand, 30710110 - 30710161
Alignment:
Q  439 cggatcttctcacgccaccggtgaagaagaaaatacgcgacagagaagaaaa 490  Q
    ||||||||||||||||| ||||| || || ||||||||||| ||||||||||    
T  30710110 cggatcttctcacgccaacggtggaggaggaaatacgcgacggagaagaaaa 30710161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University