View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11722_low_8 (Length: 493)
Name: NF11722_low_8
Description: NF11722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11722_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 20 - 444
Target Start/End: Complemental strand, 41331554 - 41331127
Alignment:
| Q |
20 |
gagatcaattagtaggtgcaaatacttgcattaattaaagcagagaatctatatccattacatgcgaaaccatccaccattagttcattagcatagttag |
119 |
Q |
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| T |
41331554 |
gagatcaattagtaagtgcaaatacttgcattaattaaagcagataatctatatccattacatgcaaaaccatccaccattagttcattagcatagttag |
41331455 |
T |
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| Q |
120 |
ttatccttaattccttaatattgaattgaattaaagtaaaatgagcacaaagatgttcactaatgagtttttcatgtgctatgattgcataatgtttagt |
219 |
Q |
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| T |
41331454 |
ttatccttaattccttaatattgaattgaattaaagtaaaatgagcacaaagattttcactaatgagtttttcatgtgctatgattgcataatttttagt |
41331355 |
T |
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| Q |
220 |
agtttctcgtatctgattgattatgggtattgagtggccaatagcactctttggatgggtccacattggtcacggaattttgtttgaacatgtata---- |
315 |
Q |
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| T |
41331354 |
agtttctcgtatctgattgattatgggta-----tggccaagagcactctttggatgggtccacattggtcacggaattttgtttcaacatgtatatgtg |
41331260 |
T |
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| Q |
316 |
----tgtgacctactaaaatactatttgctcttctcccgtgaatatttgtaagcatctaaacaagacacgaagacactccctcccatgatcgatgccatt |
411 |
Q |
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| T |
41331259 |
acattgtgacctactaaaatactatttgctcttctcccgtgaatatttgtaagcatctaaacaagacacgaagacactccctcccatgatcgatgccatt |
41331160 |
T |
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| Q |
412 |
gtcgatactcttcacggaccaaacttcattttc |
444 |
Q |
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| T |
41331159 |
gtcgatactcttcacggaccaaacttcattttc |
41331127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 437 - 469
Target Start/End: Complemental strand, 41331104 - 41331072
Alignment:
| Q |
437 |
tcattttccatgtaaaatagacctgtgtattct |
469 |
Q |
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| T |
41331104 |
tcattttccatgtaaaatagacctgtgcattct |
41331072 |
T |
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