View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11723_high_20 (Length: 290)
Name: NF11723_high_20
Description: NF11723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11723_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 8e-98; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 19 - 276
Target Start/End: Complemental strand, 11928329 - 11928072
Alignment:
| Q |
19 |
ccaagttgaggagggatttctccattcaaaccataaaaacttttacttaaatctaaatactctagctctaaaagatttcctatttgataaggaattttcc |
118 |
Q |
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| T |
11928329 |
ccaagttgaggaggtatttctccattcaaaccataaaaacttttacttaaatctaaatactctagctataaaagatttcctatttgataaggaattctcc |
11928230 |
T |
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| Q |
119 |
caggaattacagaatacgataaattgagatattttaacttggcaagtgagcctatttgttctgaaatatggctgccaggnnnnnnnttagagctaagatc |
218 |
Q |
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| T |
11928229 |
cgggaaatacagaaaacgataaattgagatattttaacttggtatgtgatcctatgtgttctgaaatatgtctgccaggaaatacattagagctaagatc |
11928130 |
T |
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| Q |
219 |
caaatattccatattttccaaggcaatcaatgaagtgaaatcaattgcacctaccaag |
276 |
Q |
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| T |
11928129 |
caaatattccatattttccaagacaatcaacgacgtgaaatcaattgcacctaccaag |
11928072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 63 - 283
Target Start/End: Complemental strand, 11962546 - 11962326
Alignment:
| Q |
63 |
acttaaatctaaatactctagctctaaaagatttcctatttgataaggaattttcccaggaattacagaatacgataaattgagatattttaacttggca |
162 |
Q |
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| T |
11962546 |
acttagatctagatattcaagctctaaaagttttccaatttgataaggaatcctcccacgaggtaaagattctgagagattgagatactttaacttggta |
11962447 |
T |
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| Q |
163 |
agtgagcctatttgttctgaaatatggctgccaggnnnnnnnttagagctaagatccaaatattccatattttccaaggcaatcaatgaagtgaaatcaa |
262 |
Q |
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| T |
11962446 |
agtgagcctatttgttctgaaatatggctgccaggaaaatcgttagagctaagatccaaatattccatattttgcaagacaatcaacgaagtgaaatcaa |
11962347 |
T |
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| Q |
263 |
ttgcacctaccaagaaatgtg |
283 |
Q |
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| T |
11962346 |
ttgcacctaccaagaattgtg |
11962326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 22 - 278
Target Start/End: Original strand, 11852964 - 11853220
Alignment:
| Q |
22 |
agttgaggagggatttctccattcaaaccataaaaacttttacttaaatctaaatactctagctctaaaagatttcctatttgataaggaattttcccag |
121 |
Q |
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||||||| |||||||||||| || | ||||||||| | | ||||| ||||| ||| || || |||||||| ||||| |||||||||||||| ||||| |
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| T |
11852964 |
agttgagaagggatttctccgtttataccataaaacatctcacttagatctagatattcaagatctaaaagttttccaatttgataaggaatcctcccac |
11853063 |
T |
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| Q |
122 |
gaattacagaatacgataaattgagatattttaacttggcaagtgagcctatttgttctgaaatatggctgccaggnnnnnnnttagagctaagatccaa |
221 |
Q |
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| T |
11853064 |
caacaaaagaatttgagaaattgagatactttaacttggtaagtgagcctatttgttctgaaaaaagattgccttgaaataaattatagctaagatccaa |
11853163 |
T |
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| Q |
222 |
atattccatattttccaaggcaatcaatgaagtgaaatcaattgcacctaccaagaa |
278 |
Q |
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| T |
11853164 |
atattccatattttgcaagacaatcaaccaagtgaaatcaattgaacctgccaagaa |
11853220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 145 - 283
Target Start/End: Original strand, 11833760 - 11833898
Alignment:
| Q |
145 |
agatattttaacttggcaagtgagcctatttgttctgaaatatggctgccaggnnnnnnnttagagctaagatccaaatattccatattttccaaggcaa |
244 |
Q |
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||||| |||||||||| ||||||||||||||||||||||||| |||| | ||| |||||||||||||||||||||||||| |||| ||| |
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| T |
11833760 |
agatactttaacttggtaagtgagcctatttgttctgaaatagaattgccttgaaataaattatggctaagatccaaatattccatattttgcaagacaa |
11833859 |
T |
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| Q |
245 |
tcaatgaagtgaaatcaattgcacctaccaagaaatgtg |
283 |
Q |
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|||| |||||||||||||||| |||||||||||| |||| |
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| T |
11833860 |
tcaacgaagtgaaatcaattgaacctaccaagaattgtg |
11833898 |
T |
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