View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11723_high_3 (Length: 780)

Name: NF11723_high_3
Description: NF11723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11723_high_3
NF11723_high_3
[»] chr4 (28 HSPs)
chr4 (19-697)||(55240039-55240728)
chr4 (431-568)||(54137192-54137332)
chr4 (416-555)||(23564466-23564605)
chr4 (408-514)||(582248-582354)
chr4 (401-554)||(8836953-8837107)
chr4 (445-663)||(36165464-36165693)
chr4 (545-633)||(11784977-11785065)
chr4 (601-683)||(23564540-23564622)
chr4 (590-683)||(9928957-9929051)
chr4 (427-554)||(23564195-23564318)
chr4 (610-663)||(18523020-18523073)
chr4 (547-664)||(36165892-36166009)
chr4 (408-512)||(18523164-18523268)
chr4 (465-554)||(2346305-2346394)
chr4 (547-672)||(23564275-23564400)
chr4 (611-683)||(8837026-8837098)
chr4 (347-387)||(53090085-53090125)
chr4 (443-505)||(9706232-9706293)
chr4 (350-384)||(19680584-19680618)
chr4 (350-383)||(2346182-2346215)
chr4 (408-504)||(9928934-9929031)
chr4 (610-663)||(18523215-18523268)
chr4 (347-380)||(18523310-18523343)
chr4 (347-380)||(23564169-23564202)
chr4 (347-388)||(25050087-25050128)
chr4 (347-384)||(36165337-36165374)
chr4 (347-388)||(37927660-37927701)
chr4 (432-473)||(55241497-55241538)
[»] chr5 (13 HSPs)
chr5 (424-575)||(42042130-42042281)
chr5 (610-683)||(8402114-8402187)
chr5 (516-587)||(10668462-10668532)
chr5 (408-505)||(8401961-8402058)
chr5 (347-384)||(8402225-8402262)
chr5 (432-499)||(12835809-12835876)
chr5 (610-683)||(8401985-8402058)
chr5 (408-473)||(28431955-28432020)
chr5 (408-500)||(8402095-8402187)
chr5 (408-479)||(6423995-6424066)
chr5 (444-503)||(33408153-33408212)
chr5 (430-479)||(12867663-12867712)
chr5 (347-380)||(31540323-31540356)
[»] chr3 (24 HSPs)
chr3 (408-554)||(20490928-20491075)
chr3 (599-683)||(50196900-50196984)
chr3 (464-654)||(50197017-50197207)
chr3 (347-399)||(20982799-20982851)
chr3 (451-505)||(22312323-22312377)
chr3 (408-474)||(30130780-30130846)
chr3 (610-672)||(30135504-30135566)
chr3 (610-672)||(30141633-30141695)
chr3 (610-672)||(30145055-30145117)
chr3 (599-672)||(30130784-30130857)
chr3 (408-474)||(30135500-30135566)
chr3 (408-474)||(30141629-30141695)
chr3 (408-474)||(30145051-30145117)
chr3 (347-388)||(331579-331620)
chr3 (599-663)||(20490917-20490982)
chr3 (347-380)||(20982671-20982704)
chr3 (347-380)||(20995554-20995587)
chr3 (347-388)||(22312204-22312245)
chr3 (343-388)||(40836677-40836722)
chr3 (459-555)||(20995595-20995690)
chr3 (545-664)||(11047444-11047563)
chr3 (489-555)||(20982741-20982807)
chr3 (425-479)||(50196928-50196982)
chr3 (347-380)||(20982191-20982224)
[»] chr2 (8 HSPs)
chr2 (433-568)||(36201946-36202081)
chr2 (409-554)||(43829730-43829875)
chr2 (544-637)||(36053556-36053649)
chr2 (466-510)||(27492218-27492262)
chr2 (610-672)||(18203095-18203157)
chr2 (610-672)||(30841546-30841608)
chr2 (594-651)||(43829620-43829677)
chr2 (611-660)||(43829826-43829875)
[»] chr1 (14 HSPs)
chr1 (425-512)||(10199964-10200051)
chr1 (408-554)||(49293023-49293169)
chr1 (443-575)||(30602442-30602574)
chr1 (619-663)||(3371665-3371709)
chr1 (610-658)||(12178099-12178147)
chr1 (411-475)||(31061253-31061317)
chr1 (420-474)||(35536769-35536823)
chr1 (433-499)||(40883985-40884051)
chr1 (599-672)||(10645792-10645865)
chr1 (345-386)||(35536871-35536912)
chr1 (488-560)||(10645695-10645767)
chr1 (487-554)||(25685825-25685892)
chr1 (547-625)||(28843427-28843505)
chr1 (347-380)||(30602338-30602371)
[»] scaffold1432 (2 HSPs)
scaffold1432 (408-474)||(932-998)
scaffold1432 (545-672)||(936-1063)
[»] chr8 (8 HSPs)
chr8 (408-473)||(32884526-32884591)
chr8 (408-503)||(30525232-30525327)
chr8 (419-473)||(32879693-32879747)
chr8 (524-672)||(12704196-12704333)
chr8 (601-664)||(30525435-30525498)
chr8 (350-387)||(28883751-28883788)
chr8 (610-659)||(30525232-30525281)
chr8 (347-380)||(42160370-42160403)
[»] chr7 (13 HSPs)
chr7 (425-512)||(36496192-36496279)
chr7 (464-513)||(5473191-5473240)
chr7 (419-498)||(8745836-8745915)
chr7 (594-663)||(8745873-8745942)
chr7 (408-469)||(23972473-23972534)
chr7 (440-493)||(31495468-31495521)
chr7 (444-495)||(33804305-33804356)
chr7 (347-380)||(5473274-5473307)
chr7 (420-505)||(6720803-6720887)
chr7 (610-659)||(23972473-23972522)
chr7 (547-592)||(29155797-29155842)
chr7 (547-664)||(41243213-41243330)
chr7 (408-457)||(41243218-41243267)
[»] scaffold0557 (3 HSPs)
scaffold0557 (426-551)||(4044-4169)
scaffold0557 (481-554)||(4354-4427)
scaffold0557 (347-380)||(4634-4667)
[»] scaffold0549 (2 HSPs)
scaffold0549 (351-389)||(1062-1100)
scaffold0549 (351-389)||(3152-3190)
[»] chr6 (5 HSPs)
chr6 (610-664)||(10742262-10742316)
chr6 (351-389)||(11339963-11340001)
chr6 (560-654)||(27134291-27134385)
chr6 (347-380)||(6728575-6728608)
chr6 (425-502)||(12425715-12425792)


Alignment Details
Target: chr4 (Bit Score: 521; Significance: 0; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 19 - 697
Target Start/End: Original strand, 55240039 - 55240728
Alignment:
Q  19 acattaaattttgacaattggagaaaggcatattttttgaattacttacacaacaaaggaagaaagaaagttgagtctatacatatttattaggagttca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55240039 acattaaattttgacaattggagaaaggcatattttttgaattacttacacaacaaaggaagaaagaaagttgagtctatacatatttattaggagttca 55240138  T
Q  119 gatggatgggtaagttggtctgctgccactgccaacctcacttgaaattcaaataggaattggcttttgtaaagtagtaagtcagtggttggttggtaag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55240139 gatggatgggtaagttggtctgctgccactgccaacctcacttgaaattcaaataggaattggcttttgtaaagtagtaagtcagtggttggttggtaag 55240238  T
Q  219 taattgtgagtatggtcatcatctgattgagtcggcctcatgtcatgnnnnnnnnaacgctaatctactggaattatgatctttcattttcatcagacat 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||  ||||||    
T  55240239 taattgtgagtatggtcatcatctgattgagtcggcctcatgtcatgttttttttaacgctaatctactggaattatgatctttcattttcagtagacat 55240338  T
Q  319 cttaaggtatctccacgagttaggtctattgaagttggttttaaagttgtttgtagtttgttgttagtct----ttgc--------tcaggttattgagt 406  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |    ||||        ||||||| ||||||    
T  55240339 cttaaggtatctccacgagttaggtctattg-agttggttttaaagttgtttgtagtttgttgttagttttatattgctcaggttttcaggttgttgagt 55240437  T
Q  407 gtaaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgta 506  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||    
T  55240438 gtaaatatacttgagtatcctcatcctttgagttagcttttgggatgagattcaagccaatttaacatggtattagagtcgggttaaagattgcaatgta 55240537  T
Q  507 ggaattatccccaagctcacgctagacgtgagggtgggtgttgaagttatttgtagtttgttgttagtctcgtattgctcaaattttcggaatgttgagt 606  Q
    ||||||   | |||||||  ||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||| ||||| | |||||||||    
T  55240538 ggaattggactcaagctcttgctagacgtgagggtggatgttgaagttgtttgtagtttgttgttagtttcgtattgctcaagttttcaggatgttgagt 55240637  T
Q  607 atgtaaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctatttagcatgttatcattgaaaccattatt 697  Q
    || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  55240638 atataaatatgcttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctatttagcatggtatcattgaaaccattatt 55240728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 431 - 568
Target Start/End: Complemental strand, 54137332 - 54137192
Alignment:
Q  431 cctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgtaggaattatccccaagctcacgcta 530  Q
    ||||| |||||| |||||||||||||||||||   | |||||||||||| |||||||||||||||||||||||||  ||||||  |||| || ||| |||    
T  54137332 ccttttagttagcttttgggatgagattcaagctcaattaacatggtatcagagtcgggttaaggattgcaatgtgagaattagacccaggcccactcta 54137233  T
Q  531 gacgtgagggtg--ggtgttg-aagttatttgtagtttgtt 568  Q
    | ||||||||||  ||| ||| ||||| |||||||||||||    
T  54137232 ggcgtgagggtggtggtattgaaagttgtttgtagtttgtt 54137192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 416 - 555
Target Start/End: Complemental strand, 23564605 - 23564466
Alignment:
Q  416 cttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgtaggaattatc 515  Q
    |||||||| |||||||||||||| ||  |||||||||||||| |||  |||||||||||||||| |||| | |||||| ||||  ||||| ||||| |      
T  23564605 cttgagtaccctcatcctttgagctaacttttgggatgagatccaaacctatttaacatggtatcagagcctggttaaagattataatgtgggaatcaga 23564506  T
Q  516 cccaagctcacgctagacgtgagggtgggtgttgaagtta 555  Q
    | || || |||||||| ||||||||||||||| |||||||    
T  23564505 ctcaggcccacgctaggcgtgagggtgggtgtggaagtta 23564466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 408 - 514
Target Start/End: Original strand, 582248 - 582354
Alignment:
Q  408 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgtag 507  Q
    ||||||||||||| || | | |||||||||||||  ||||  ||||||||||||||  |||||||||||||| ||||||||||| | ||||||||||| |    
T  582248 taaatatacttgaatacctttatcctttgagttaacttttaagatgagattcaagttcatttaacatggtatcagagtcgggtttaagattgcaatgtgg 582347  T
Q  508 gaattat 514  Q
    |||||||    
T  582348 gaattat 582354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 401 - 554
Target Start/End: Complemental strand, 8837107 - 8836953
Alignment:
Q  401 ttgagtgtaaa-tatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattg 499  Q
    ||||||||||| |||  ||||||| |||||| ||||||| ||   |||||||||||||||||  |||||||||||||||| | ||| |||||||||||||    
T  8837107 ttgagtgtaaaatatgtttgagtaccctcattctttgagctaaactttgggatgagattcaaacctatttaacatggtatcacagttgggttaaggattg 8837008  T
Q  500 caatgtaggaattatccccaagctcacgctagacgtgagggtgggtgttgaagtt 554  Q
    |||||  ||||||    |||    |||||||||||||||||||| ||||||||||    
T  8837007 caatgcgggaattgaaaccagaaccacgctagacgtgagggtggatgttgaagtt 8836953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 445 - 663
Target Start/End: Complemental strand, 36165693 - 36165464
Alignment:
Q  445 tttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgtaggaattatccccaagctcacgctagacgtgagggtggg 544  Q
    ||||||||||||| |||||||||| |||||||||||||||  | | ||| ||||||||||| |||||||  | || ||||||||||| | | || |||||    
T  36165693 tttgggatgagat-caagtctattaaacatggtattagagctgagataaagattgcaatgtgggaattagactcaggctcacgctaggcataagagtggg 36165595  T
Q  545 tgttgaagtta------------tttgtagtttgttgttagtctcgtattgctcaaattttcggaatgttgagtatgtaaatatgtttgagtaccctcat 632  Q
    |||||||||||            |||||| ||||||  ||||| |  |||||| |  ||  |||  |||||||| | |||| ||||||||||||||||||    
T  36165594 tgttgaagttagttttgaagttgtttgtaatttgtttctagtcccacattgctaaggttcccgggttgttgagtgtataaagatgtttgagtaccctcat 36165495  T
Q  633 cttttgagcgagcttttgggatgagatccaa 663  Q
    |||||| || || ||||||||||||||||||    
T  36165494 cttttgtgctagattttgggatgagatccaa 36165464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 545 - 633
Target Start/End: Original strand, 11784977 - 11785065
Alignment:
Q  545 tgttgaagttatttgtagtttgttgttagtctcgtattgctcaaattttcggaatgttgagtatgtaaatatgtttgagtaccctcatc 633  Q
    |||||||||| |||||||||||||||||||| |  ||| ||||  || ||||| |||||||| | ||||||||||||||||||||||||    
T  11784977 tgttgaagttgtttgtagtttgttgttagtcccacattactcaggttctcggactgttgagtgtataaatatgtttgagtaccctcatc 11785065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 601 - 683
Target Start/End: Complemental strand, 23564622 - 23564540
Alignment:
Q  601 ttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctatttagcatgttatca 683  Q
    |||||| || || |||| ||||||||||||||| ||||||| | |||||||||||||||||||| ||||||| |||| |||||    
T  23564622 ttgagtgtgcaagtatgcttgagtaccctcatcctttgagctaacttttgggatgagatccaaacctatttaacatggtatca 23564540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 590 - 683
Target Start/End: Complemental strand, 9929051 - 9928957
Alignment:
Q  590 ttttcggaatgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagcttttgggatgaga-tccaaatctatttagcatgttatca 683  Q
    ||||||||  ||||||||| |||||||||||||||| ||||||||||||||| | ||||||| || ||| |||||  ||||||| |||| |||||    
T  9929051 ttttcggatcgttgagtatataaatatgtttgagtatcctcatcttttgagctaacttttggaataagattccaagcctatttaacatggtatca 9928957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 427 - 554
Target Start/End: Complemental strand, 23564318 - 23564195
Alignment:
Q  427 tcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgtaggaattatccccaagctcac 526  Q
    ||||| ||| ||||||  ||||||||||||| |||||| |||||||| |||    ||||||||||| |||||||| | | ||||||   ||||| | |||    
T  23564318 tcatcttttaagttagcatttgggatgagatccaagtcaatttaacaaggt----gagtcgggttatggattgcagttttggaattggacccaatcccac 23564223  T
Q  527 gctagacgtgagggtgggtgttgaagtt 554  Q
    |||||| ||||||||| |||||||||||    
T  23564222 gctagatgtgagggtgagtgttgaagtt 23564195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 610 - 663
Target Start/End: Complemental strand, 18523073 - 18523020
Alignment:
Q  610 taaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaa 663  Q
    |||||||| ||||||||| ||||| ||||||||||||||||| |||||||||||    
T  18523073 taaatatgcttgagtaccatcatcctttgagcgagcttttggtatgagatccaa 18523020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 547 - 664
Target Start/End: Complemental strand, 36166009 - 36165892
Alignment:
Q  547 ttgaagttatttgtagtttgttgttagtctcgtattgctcaaattttcggaatgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagct 646  Q
    |||||||| |||||||||| || ||||||||  |||  |||   |||||| ||||||||| | |||| ||||||||| ||||||||| ||| ||| | ||    
T  36166009 ttgaagttgtttgtagtttatttttagtctcacattattcaggctttcgggatgttgagtgtataaacatgtttgagcaccctcatcctttaagctaact 36165910  T
Q  647 tttgggatgagatccaaa 664  Q
    |||| |||||||||||||    
T  36165909 tttgcgatgagatccaaa 36165892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 408 - 512
Target Start/End: Complemental strand, 18523268 - 18523164
Alignment:
Q  408 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgtag 507  Q
    |||||||  ||||||| |||||||||||||| ||  ||||||||  |||| |||| |||||| |||  |||| |||| ||||||||| |||||||||| |    
T  18523268 taaatatgtttgagtaccctcatcctttgaggtatcttttgggagcagatccaagcctatttcacagagtatcagagccgggttaagaattgcaatgttg 18523169  T
Q  508 gaatt 512  Q
    |||||    
T  18523168 gaatt 18523164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 465 - 554
Target Start/End: Original strand, 2346305 - 2346394
Alignment:
Q  465 tatttaacatggtattagagtcgggttaaggattgcaatgtaggaattatccccaagctcacgctagacgtgagggtgggtgttgaagtt 554  Q
    ||||||||||||||| | || ||||||||||||||| |||| ||||||   ||||  | || |||||  |||||||||||||||||||||    
T  2346305 tatttaacatggtatcaaaggcgggttaaggattgcgatgtgggaattggacccagacccatgctaggtgtgagggtgggtgttgaagtt 2346394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 547 - 672
Target Start/End: Complemental strand, 23564400 - 23564275
Alignment:
Q  547 ttgaagttatttgtagtttgttgttagtctcgtattgctcaaattttcggaatgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagct 646  Q
    |||||||| ||||||||||||| || ||| |  ||||||||  ||||| |  |||||||| | ||| ||||||| || ||| ||||||||| ||  |||     
T  23564400 ttgaagttgtttgtagtttgttatttgtcccacattgctcaggttttcaggttgttgagtgtataagtatgttttagaaccttcatcttttaagttagca 23564301  T
Q  647 tttgggatgagatccaaatctattta 672  Q
    ||||||||||||||||| || |||||    
T  23564300 tttgggatgagatccaagtcaattta 23564275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 611 - 683
Target Start/End: Complemental strand, 8837098 - 8837026
Alignment:
Q  611 aaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctatttagcatgttatca 683  Q
    ||||||||||||||||||||||  ||||||| |   ||||||||||||| |||| ||||||| |||| |||||    
T  8837098 aaatatgtttgagtaccctcattctttgagctaaactttgggatgagattcaaacctatttaacatggtatca 8837026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 347 - 387
Target Start/End: Complemental strand, 53090125 - 53090085
Alignment:
Q  347 ttgaagttggttttaaagttgtttgtagtttgttgttagtc 387  Q
    ||||||||| |||| ||||||||||||||||||||||||||    
T  53090125 ttgaagttgattttgaagttgtttgtagtttgttgttagtc 53090085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 443 - 505
Target Start/End: Original strand, 9706232 - 9706293
Alignment:
Q  443 tttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgt 505  Q
    |||||| | |||||| |||||| ||||| |||||||| || ||||||||||||||||||||||    
T  9706232 tttttgagttgagatccaagtc-atttagcatggtatcagggtcgggttaaggattgcaatgt 9706293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 350 - 384
Target Start/End: Complemental strand, 19680618 - 19680584
Alignment:
Q  350 aagttggttttaaagttgtttgtagtttgttgtta 384  Q
    ||||||||||||||||| |||||||||||||||||    
T  19680618 aagttggttttaaagttatttgtagtttgttgtta 19680584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 350 - 383
Target Start/End: Original strand, 2346182 - 2346215
Alignment:
Q  350 aagttggttttaaagttgtttgtagtttgttgtt 383  Q
    |||||||||||||||||||||||||||| |||||    
T  2346182 aagttggttttaaagttgtttgtagtttattgtt 2346215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 408 - 504
Target Start/End: Complemental strand, 9929031 - 9928934
Alignment:
Q  408 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagatt-caagtctatttaacatggtattagagtcgggttaaggattgcaatg 504  Q
    |||||||  ||||||||||||||| |||||| ||  |||||| || ||||| |||| |||||||||||||||| | ||| || |||| ||||| ||||    
T  9929031 taaatatgtttgagtatcctcatcttttgagctaacttttggaataagattccaagcctatttaacatggtatcaaagttggtttaaagattgtaatg 9928934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 610 - 663
Target Start/End: Complemental strand, 18523268 - 18523215
Alignment:
Q  610 taaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaa 663  Q
    |||||||||||||||||||||||| ||||||  | |||||||||  ||||||||    
T  18523268 taaatatgtttgagtaccctcatcctttgaggtatcttttgggagcagatccaa 18523215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 347 - 380
Target Start/End: Complemental strand, 18523343 - 18523310
Alignment:
Q  347 ttgaagttggttttaaagttgtttgtagtttgtt 380  Q
    |||||||||||||| |||||||||||||||||||    
T  18523343 ttgaagttggttttgaagttgtttgtagtttgtt 18523310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 347 - 380
Target Start/End: Complemental strand, 23564202 - 23564169
Alignment:
Q  347 ttgaagttggttttaaagttgtttgtagtttgtt 380  Q
    ||||||||||||||||||||| ||||||||||||    
T  23564202 ttgaagttggttttaaagttgattgtagtttgtt 23564169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 347 - 388
Target Start/End: Original strand, 25050087 - 25050128
Alignment:
Q  347 ttgaagttggttttaaagttgtttgtagtttgttgttagtct 388  Q
    |||||||||||||| |||||||||||||  ||||||||||||    
T  25050087 ttgaagttggttttgaagttgtttgtagcatgttgttagtct 25050128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 347 - 384
Target Start/End: Complemental strand, 36165374 - 36165337
Alignment:
Q  347 ttgaagttggttttaaagttgtttgtagtttgttgtta 384  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  36165374 ttgaagttgattttaaagttgtttttagtttgttgtta 36165337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 347 - 388
Target Start/End: Original strand, 37927660 - 37927701
Alignment:
Q  347 ttgaagttggttttaaagttgtttgtagtttgttgttagtct 388  Q
    |||||||| ||||| ||||||||||||||||||| |||||||    
T  37927660 ttgaagttagttttgaagttgtttgtagtttgttattagtct 37927701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 432 - 473
Target Start/End: Original strand, 55241497 - 55241538
Alignment:
Q  432 ctttgagttagtttttgggatgagattcaagtctatttaaca 473  Q
    ||||||| ||| |||||||||||||||||||| |||||||||    
T  55241497 ctttgagctagcttttgggatgagattcaagtttatttaaca 55241538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 424 - 575
Target Start/End: Original strand, 42042130 - 42042281
Alignment:
Q  424 tcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgtaggaattatccccaagct 523  Q
    ||||||| | ||||| |||||||||||||||||| |||   ||||||||||||||| |||||||||||||||||||| |||| ||||||   | |||||     
T  42042130 tcctcattcattgagctagtttttgggatgagatccaaacttatttaacatggtatcagagtcgggttaaggattgcgatgtgggaattgggcacaagcc 42042229  T
Q  524 cacgctagacgtgagggtgggtgttgaagttatttgtagtttgttgttagtc 575  Q
     ||||||  || |||||||||||| |||||| ||| ||||||||||||||||    
T  42042230 tacgctaagcgcgagggtgggtgtcgaagttgtttatagtttgttgttagtc 42042281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 610 - 683
Target Start/End: Complemental strand, 8402187 - 8402114
Alignment:
Q  610 taaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctatttagcatgttatca 683  Q
    ||||||||||||||||||||| || ||||||| | |||||||||||| |||||||| |||||| |||| |||||    
T  8402187 taaatatgtttgagtaccctcctcctttgagctaacttttgggatgaaatccaaatttatttaacatggtatca 8402114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 516 - 587
Target Start/End: Original strand, 10668462 - 10668532
Alignment:
Q  516 cccaagctcacgctagacgtgagggtgggtgttgaagttatttgtagtttgttgttagtctcgtattgctca 587  Q
    ||||||| |||||||| | |||||||||||||||||||| ||||||||||||| ||||||||  ||||||||    
T  10668462 cccaagcccacgctaggcctgagggtgggtgttgaagttgtttgtagtttgtt-ttagtctcacattgctca 10668532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 408 - 505
Target Start/End: Complemental strand, 8402058 - 8401961
Alignment:
Q  408 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgt 505  Q
    ||||||| |||||||| |||| ||||||||| ||  |||||| ||||||| |||   ||||||||||||||| |||| |||||||| |||||| ||||    
T  8402058 taaatatgcttgagtaccctcctcctttgagctaacttttggaatgagatccaaacttatttaacatggtatcagagccgggttaatgattgcgatgt 8401961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 347 - 384
Target Start/End: Complemental strand, 8402262 - 8402225
Alignment:
Q  347 ttgaagttggttttaaagttgtttgtagtttgttgtta 384  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8402262 ttgaagttggttttaaagttgtttgtagtttgttgtta 8402225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 432 - 499
Target Start/End: Complemental strand, 12835876 - 12835809
Alignment:
Q  432 ctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattg 499  Q
    ||||||||||||||| |||||||||||||||  |||||||||| |||| | | || ||||||||||||    
T  12835876 ctttgagttagttttcgggatgagattcaagattatttaacatagtatcaaaatcaggttaaggattg 12835809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 610 - 683
Target Start/End: Complemental strand, 8402058 - 8401985
Alignment:
Q  610 taaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctatttagcatgttatca 683  Q
    |||||||| |||||||||||| || ||||||| | ||||||| ||||||||||||  |||||| |||| |||||    
T  8402058 taaatatgcttgagtaccctcctcctttgagctaacttttggaatgagatccaaacttatttaacatggtatca 8401985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 408 - 473
Target Start/End: Complemental strand, 28432020 - 28431955
Alignment:
Q  408 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaaca 473  Q
    ||||||| |||||||||||||||||||| |  ||| |||||| |||| ||||||| ||||||||||    
T  28432020 taaatatgcttgagtatcctcatcctttaaactagcttttggaatgaaattcaagcctatttaaca 28431955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 408 - 500
Target Start/End: Complemental strand, 8402187 - 8402095
Alignment:
Q  408 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgc 500  Q
    |||||||  ||||||| |||| ||||||||| ||  ||||||||||| || ||| | ||||||||||||||| | || |||||||| ||||||    
T  8402187 taaatatgtttgagtaccctcctcctttgagctaacttttgggatgaaatccaaatttatttaacatggtatcaaagccgggttaatgattgc 8402095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 479
Target Start/End: Original strand, 6423995 - 6424066
Alignment:
Q  408 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtat 479  Q
    |||||||  ||||||||| ||||| ||| || |||||||| |||||||||||||   |||||||||||||||    
T  6423995 taaatatgtttgagtatcatcatcttttaagctagtttttaggatgagattcaatcttatttaacatggtat 6424066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 503
Target Start/End: Complemental strand, 33408212 - 33408153
Alignment:
Q  444 ttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaat 503  Q
    ||||||||||||||||||    |||||||||||||| |||||||| |||| |||||||||    
T  33408212 ttttgggatgagattcaaactcatttaacatggtatcagagtcggtttaatgattgcaat 33408153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 430 - 479
Target Start/End: Complemental strand, 12867712 - 12867663
Alignment:
Q  430 tcctttgagttagtttttgggatgagattcaagtctatttaacatggtat 479  Q
    ||||||||||||||||| |||||| ||||||||  |||||||||| ||||    
T  12867712 tcctttgagttagttttcgggatgcgattcaagattatttaacatagtat 12867663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 347 - 380
Target Start/End: Complemental strand, 31540356 - 31540323
Alignment:
Q  347 ttgaagttggttttaaagttgtttgtagtttgtt 380  Q
    |||||||||||||| |||||||||||||||||||    
T  31540356 ttgaagttggttttgaagttgtttgtagtttgtt 31540323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 408 - 554
Target Start/End: Original strand, 20490928 - 20491075
Alignment:
Q  408 taaatatacttgagtatcctcatcctttgagttag-tttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgta 506  Q
    |||||||||||||||| |||| || |||||| ||| ||||||||||||||| ||||   |||||||||||||| |||| | |||||| |||| ||||||     
T  20490928 taaatatacttgagtaccctcgtcttttgagctagctttttgggatgagatccaagctcatttaacatggtatcagagccaggttaatgattacaatgtg 20491027  T
Q  507 ggaattatccccaagctcacgctagacgtgagggtgggtgttgaagtt 554  Q
    ||||||    ||| || ||| |||||||||||||||||| ||||||||    
T  20491028 ggaattggatccaggcccacactagacgtgagggtgggtattgaagtt 20491075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 599 - 683
Target Start/End: Original strand, 50196900 - 50196984
Alignment:
Q  599 tgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctatttagcatgttatca 683  Q
    |||||||| | ||||||||||| | |||||||||| ||||||| | |||||||||||||||||||| ||||||| |||| |||||    
T  50196900 tgttgagtgtataaatatgtttaaataccctcatcctttgagctaacttttgggatgagatccaaacctatttaacatggtatca 50196984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 464 - 654
Target Start/End: Original strand, 50197017 - 50197207
Alignment:
Q  464 ctatttaacatggtattagagtcgggttaaggattgcaatgtaggaattatccccaagctcacgctagacgtgagggtgggtgttgaagttatttgtagt 563  Q
    |||||||||||||||| | |||||| |||||||||||||||| | ||||   |  |  | ||| ||||  ||||| ||||||||||||||| ||| ||||    
T  50197017 ctatttaacatggtatcatagtcggattaaggattgcaatgtggaaattggacttagacccacactaggggtgagagtgggtgttgaagttgtttatagt 50197116  T
Q  564 ttgttgttagtctcgtattgctcaaattttcggaatgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagcttttgggat 654  Q
    ||||| || ||| |  ||||||||  ||  || | |||||||| | |||||||| | ||||||||||||| ||||| | ||||||||||||    
T  50197117 ttgttatttgtcccacattgctcaggttcacgaactgttgagtgtataaatatggtcgagtaccctcatcctttgatctagcttttgggat 50197207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 347 - 399
Target Start/End: Original strand, 20982799 - 20982851
Alignment:
Q  347 ttgaagttggttttaaagttgtttgtagtttgttgttagtctttgctcaggtt 399  Q
    |||||||| ||||||||||||||||||||||||| || |||||||||||||||    
T  20982799 ttgaagttagttttaaagttgtttgtagtttgttatttgtctttgctcaggtt 20982851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 451 - 505
Target Start/End: Original strand, 22312323 - 22312377
Alignment:
Q  451 atgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgt 505  Q
    |||||||||||  |||||||||||||||| ||||||||||||| |||||||||||    
T  22312323 atgagattcaaacctatttaacatggtatcagagtcgggttaaagattgcaatgt 22312377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 408 - 474
Target Start/End: Complemental strand, 30130846 - 30130780
Alignment:
Q  408 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacat 474  Q
    ||||||| |||||||||| ||||| |||||| |||||||||||||||||| |||  |||||||||||    
T  30130846 taaatatgcttgagtatcttcatcatttgagctagtttttgggatgagatccaaacctatttaacat 30130780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 610 - 672
Target Start/End: Complemental strand, 30135566 - 30135504
Alignment:
Q  610 taaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctattta 672  Q
    |||||||| ||||||||||||||| ||||||| | |||||||||||||||||||  |||||||    
T  30135566 taaatatgcttgagtaccctcatcatttgagctaacttttgggatgagatccaagcctattta 30135504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 610 - 672
Target Start/End: Complemental strand, 30141695 - 30141633
Alignment:
Q  610 taaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctattta 672  Q
    |||||||| ||||||||||||||| ||||||| | |||||||||||||||||||  |||||||    
T  30141695 taaatatgcttgagtaccctcatcatttgagctaacttttgggatgagatccaagcctattta 30141633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 610 - 672
Target Start/End: Complemental strand, 30145117 - 30145055
Alignment:
Q  610 taaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctattta 672  Q
    |||||||| ||||||||||||||| ||||||| | |||||||||||||||||||  |||||||    
T  30145117 taaatatgcttgagtaccctcatcatttgagctaacttttgggatgagatccaagcctattta 30145055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 599 - 672
Target Start/End: Complemental strand, 30130857 - 30130784
Alignment:
Q  599 tgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctattta 672  Q
    |||||||| | |||||||| ||||||| | ||||| ||||||| || ||||||||||||||||||| |||||||    
T  30130857 tgttgagtgtataaatatgcttgagtatcttcatcatttgagctagtttttgggatgagatccaaacctattta 30130784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 408 - 474
Target Start/End: Complemental strand, 30135566 - 30135500
Alignment:
Q  408 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacat 474  Q
    ||||||| |||||||| ||||||| |||||| ||  |||||||||||||| |||| |||||||||||    
T  30135566 taaatatgcttgagtaccctcatcatttgagctaacttttgggatgagatccaagcctatttaacat 30135500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 408 - 474
Target Start/End: Complemental strand, 30141695 - 30141629
Alignment:
Q  408 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacat 474  Q
    ||||||| |||||||| ||||||| |||||| ||  |||||||||||||| |||| |||||||||||    
T  30141695 taaatatgcttgagtaccctcatcatttgagctaacttttgggatgagatccaagcctatttaacat 30141629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 408 - 474
Target Start/End: Complemental strand, 30145117 - 30145051
Alignment:
Q  408 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacat 474  Q
    ||||||| |||||||| ||||||| |||||| ||  |||||||||||||| |||| |||||||||||    
T  30145117 taaatatgcttgagtaccctcatcatttgagctaacttttgggatgagatccaagcctatttaacat 30145051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 347 - 388
Target Start/End: Complemental strand, 331620 - 331579
Alignment:
Q  347 ttgaagttggttttaaagttgtttgtagtttgttgttagtct 388  Q
    ||||||| |||||||||||||||||||||||||| |||||||    
T  331620 ttgaagtcggttttaaagttgtttgtagtttgtttttagtct 331579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 599 - 663
Target Start/End: Original strand, 20490917 - 20490982
Alignment:
Q  599 tgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagc-ttttgggatgagatccaa 663  Q
    |||||||| | |||||||  |||||||||||| |||||||||| ||| ||||||||||||||||||    
T  20490917 tgttgagtgtataaatatacttgagtaccctcgtcttttgagctagctttttgggatgagatccaa 20490982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 347 - 380
Target Start/End: Complemental strand, 20982704 - 20982671
Alignment:
Q  347 ttgaagttggttttaaagttgtttgtagtttgtt 380  Q
    ||||||||||||||||||||||||||||||||||    
T  20982704 ttgaagttggttttaaagttgtttgtagtttgtt 20982671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 347 - 380
Target Start/End: Complemental strand, 20995587 - 20995554
Alignment:
Q  347 ttgaagttggttttaaagttgtttgtagtttgtt 380  Q
    ||||||||||||||||||||||||||||||||||    
T  20995587 ttgaagttggttttaaagttgtttgtagtttgtt 20995554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 347 - 388
Target Start/End: Original strand, 22312204 - 22312245
Alignment:
Q  347 ttgaagttggttttaaagttgtttgtagtttgttgttagtct 388  Q
    |||||||||||||| ||||||||||||||||||| |||||||    
T  22312204 ttgaagttggttttgaagttgtttgtagtttgttattagtct 22312245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 343 - 388
Target Start/End: Original strand, 40836677 - 40836722
Alignment:
Q  343 tctattgaagttggttttaaagttgtttgtagtttgttgttagtct 388  Q
    |||||||||||||||||| || ||||||||||||| ||||||||||    
T  40836677 tctattgaagttggttttgaaattgtttgtagtttcttgttagtct 40836722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 459 - 555
Target Start/End: Original strand, 20995595 - 20995690
Alignment:
Q  459 caagtctatttaacatggtattagagtcgggttaaggattgcaatgtaggaattatccccaagctcacgctagacgtgagggtgggtgttgaagtta 555  Q
    |||| |||||||||||| ||| |||| ||| |||| ||||||||||| | |||||  |||  || |||| ||| |||||||||||||||||||||||    
T  20995595 caagcctatttaacatgatatgagagccgg-ttaaagattgcaatgtggaaattagacccgggcccacgttaggcgtgagggtgggtgttgaagtta 20995690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 664
Target Start/End: Original strand, 11047444 - 11047563
Alignment:
Q  545 tgttgaagttatttgtagtttgttgttagtctcgtattgctcaaattttcggaatgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgag 644  Q
    |||||||||| |||||||||||||  ||||| |  ||||||||  |||  |   |||||||| | |||||| | ||||||||||||||| ||||||| |     
T  11047444 tgttgaagttgtttgtagtttgtttctagtcccacattgctcaggtttgtgcgctgttgagtgtataaatacgcttgagtaccctcatcctttgagctaa 11047543  T
Q  645 cttttgggatgagatccaaa 664  Q
    |||||  |||||||||||||    
T  11047544 cttttatgatgagatccaaa 11047563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 489 - 555
Target Start/End: Original strand, 20982741 - 20982807
Alignment:
Q  489 gttaaggattgcaatgtaggaattatccccaagctcacgctagacgtgagggtgggtgttgaagtta 555  Q
    ||||||||||||| || ||||||||  |||| || ||||||||  |||||||||| |||||||||||    
T  20982741 gttaaggattgcattgcaggaattagacccaggcgcacgctaggagtgagggtggatgttgaagtta 20982807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 425 - 479
Target Start/End: Original strand, 50196928 - 50196982
Alignment:
Q  425 cctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtat 479  Q
    |||||||||||||| ||  |||||||||||||| |||  ||||||||||||||||    
T  50196928 cctcatcctttgagctaacttttgggatgagatccaaacctatttaacatggtat 50196982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 347 - 380
Target Start/End: Complemental strand, 20982224 - 20982191
Alignment:
Q  347 ttgaagttggttttaaagttgtttgtagtttgtt 380  Q
    ||||||||||||||||| ||||||||||||||||    
T  20982224 ttgaagttggttttaaaattgtttgtagtttgtt 20982191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 433 - 568
Target Start/End: Original strand, 36201946 - 36202081
Alignment:
Q  433 tttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgtaggaattatccccaagctcacgctaga 532  Q
    |||||||||| |||||||| ||||||||||  | ||||||||||||| |||||||||||||| ||| |||||| | ||||   | |||||||||| || |    
T  36201946 tttgagttagcttttgggaggagattcaagcatgtttaacatggtatcagagtcgggttaagaattacaatgtggaaattggactcaagctcacgttaaa 36202045  T
Q  533 cgtgagggtgggtgttgaagttatttgtagtttgtt 568  Q
    |||||| |||  ||||||| || |||||||||||||    
T  36202046 cgtgagagtgaatgttgaaattgtttgtagtttgtt 36202081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 409 - 554
Target Start/End: Complemental strand, 43829875 - 43829730
Alignment:
Q  409 aaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgtagg 508  Q
    |||||| |||||||| |||||||| ||||| ||| | ||||||||||||  |||   ||| |||||||||| ||||||||||||||||||||| ||| ||    
T  43829875 aaatatgcttgagtaccctcatccattgagctagctgttgggatgagatcaaagctcattaaacatggtatcagagtcgggttaaggattgcagtgtggg 43829776  T
Q  509 aattatccccaagctcacgctagacgtgagggtgggtgttgaagtt 554  Q
    | ||     || || |||  ||||||||||||||||||||||||||    
T  43829775 agttggattcaggcccacattagacgtgagggtgggtgttgaagtt 43829730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 544 - 637
Target Start/End: Complemental strand, 36053649 - 36053556
Alignment:
Q  544 gtgttgaagttatttgtagtttgttgttagtctcgtattgctcaaattttcggaatgttgagtatgtaaatatgtttgagtaccctcatctttt 637  Q
    ||||||||||| ||||||||||| | |||||  |||||||||||  || | ||| |||| ||| ||||||||||||||| |||  |||||||||    
T  36053649 gtgttgaagttgtttgtagtttgcttttagttccgtattgctcaggttcttggactgtttagtgtgtaaatatgtttgaatactttcatctttt 36053556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 466 - 510
Target Start/End: Original strand, 27492218 - 27492262
Alignment:
Q  466 atttaacatggtattagagtcgggttaaggattgcaatgtaggaa 510  Q
    ||||||||||||| ||||| |||||||| ||||||||||||||||    
T  27492218 atttaacatggtactagagccgggttaatgattgcaatgtaggaa 27492262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 610 - 672
Target Start/End: Complemental strand, 18203157 - 18203095
Alignment:
Q  610 taaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctattta 672  Q
    ||||||||||| | |||||||||| ||||| | | ||||| ||||||||| ||||||||||||    
T  18203157 taaatatgtttaaataccctcatcatttgaactaacttttaggatgagattcaaatctattta 18203095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 610 - 672
Target Start/End: Complemental strand, 30841608 - 30841546
Alignment:
Q  610 taaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctattta 672  Q
    |||||||||||||||| ||||||| ||| | | | ||| |||||||||||||||| |||||||    
T  30841608 taaatatgtttgagtatcctcatcctttaaactaacttgtgggatgagatccaaacctattta 30841546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 594 - 651
Target Start/End: Complemental strand, 43829677 - 43829620
Alignment:
Q  594 cggaatgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagcttttgg 651  Q
    |||| |||||||| | |||||||||||||||| ||||||  ||||||| |||||||||    
T  43829677 cggactgttgagtgtataaatatgtttgagtatcctcattctttgagctagcttttgg 43829620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 611 - 660
Target Start/End: Complemental strand, 43829875 - 43829826
Alignment:
Q  611 aaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatc 660  Q
    ||||||| |||||||||||||||  |||||| |||| |||||||||||||    
T  43829875 aaatatgcttgagtaccctcatccattgagctagctgttgggatgagatc 43829826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 425 - 512
Target Start/End: Original strand, 10199964 - 10200051
Alignment:
Q  425 cctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgtaggaatt 512  Q
    ||||||||||||| |||  ||||||||||||||||||| | ||||||||||||||| | ||||||||||| |||||||||| ||||||    
T  10199964 cctcatcctttgaattaacttttgggatgagattcaagcccatttaacatggtattggtgtcgggttaagaattgcaatgtgggaatt 10200051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 408 - 554
Target Start/End: Original strand, 49293023 - 49293169
Alignment:
Q  408 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgtag 507  Q
    |||||||  |||| || |||| ||| ||||| ||| ||||| ||||||||||| |  ||||| || | |||||||||||||||||||||| ||||||| |    
T  49293023 taaatatttttgaataccctcgtcccttgagctagcttttgagatgagattcaggcatattttacgtcgtattagagtcgggttaaggatcgcaatgtgg 49293122  T
Q  508 gaattatccccaagctcacgctagacgtgagggtgggtgttgaagtt 554  Q
    |||||   | ||| | || | |||||||||||||| |||||||||||    
T  49293123 gaattggactcaaacccatgatagacgtgagggtgagtgttgaagtt 49293169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 443 - 575
Target Start/End: Original strand, 30602442 - 30602574
Alignment:
Q  443 tttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgtaggaattatccccaagctcacgctagacgtgagggtg 542  Q
    |||||| ||| |||| |||  |||||||||||| |||||||||| |||||||||||||||| | | ||||    ||| || ||||||||  |||||||||    
T  30602442 tttttgagataagatccaaacctatttaacatgatattagagtcaggttaaggattgcaatttggaaattggatccaggcccacgctaggagtgagggtg 30602541  T
Q  543 ggtgttgaagttatttgtagtttgttgttagtc 575  Q
     || |||||||| |||||||| | |||||||||    
T  30602542 agttttgaagttgtttgtagtcttttgttagtc 30602574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 619 - 663
Target Start/End: Original strand, 3371665 - 3371709
Alignment:
Q  619 ttgagtaccctcatcttttgagcgagcttttgggatgagatccaa 663  Q
    ||||||||||||||||||||||  |||||||||||||||||||||    
T  3371665 ttgagtaccctcatcttttgaggtagcttttgggatgagatccaa 3371709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 610 - 658
Target Start/End: Complemental strand, 12178147 - 12178099
Alignment:
Q  610 taaatatgtttgagtaccctcatcttttgagcgagcttttgggatgaga 658  Q
    |||||||||||||||||||||||| ||||| | ||||||||||||||||    
T  12178147 taaatatgtttgagtaccctcatcctttgacctagcttttgggatgaga 12178099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 411 - 475
Target Start/End: Original strand, 31061253 - 31061317
Alignment:
Q  411 atatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatg 475  Q
    ||||| ||||||||| ||||| |||||||||| |||| | |||||||||||| ||||||||||||    
T  31061253 atatatttgagtatcatcatcttttgagttagcttttagaatgagattcaagcctatttaacatg 31061317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 420 - 474
Target Start/End: Complemental strand, 35536823 - 35536769
Alignment:
Q  420 agtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacat 474  Q
    |||||||||||| |||||||||  ||||||||||||||| ||||| |||||||||    
T  35536823 agtatcctcatcatttgagttaacttttgggatgagattgaagtccatttaacat 35536769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 433 - 499
Target Start/End: Original strand, 40883985 - 40884051
Alignment:
Q  433 tttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattg 499  Q
    |||||||||||||||| ||||  || ||||   ||||||||||||||||||||||||||||| ||||    
T  40883985 tttgagttagtttttgtgatgtaatccaagctgatttaacatggtattagagtcgggttaagaattg 40884051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 599 - 672
Target Start/End: Original strand, 10645792 - 10645865
Alignment:
Q  599 tgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctattta 672  Q
    |||||||| | |||||||||||||||||||||||| || |||| | |||||  ||||||||| ||| |||||||    
T  10645792 tgttgagtgtataaatatgtttgagtaccctcatccttagagctatcttttaagatgagatcaaaacctattta 10645865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 345 - 386
Target Start/End: Complemental strand, 35536912 - 35536871
Alignment:
Q  345 tattgaagttggttttaaagttgtttgtagtttgttgttagt 386  Q
    |||||||||| |||||||||||||| ||||||||||||||||    
T  35536912 tattgaagttcgttttaaagttgttggtagtttgttgttagt 35536871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 488 - 560
Target Start/End: Original strand, 10645695 - 10645767
Alignment:
Q  488 ggttaaggattgcaatgtaggaattatccccaagctcacgctagacgtgagggtgggtgttgaagttatttgt 560  Q
    |||||| |||| |||||| |||||| | | || || |||||||| |||||||||||||||||||||| |||||    
T  10645695 ggttaaagattccaatgtgggaattgtactcaggcccacgctaggcgtgagggtgggtgttgaagttgtttgt 10645767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 487 - 554
Target Start/End: Original strand, 25685825 - 25685892
Alignment:
Q  487 gggttaaggattgcaatgtaggaattatccccaagctcacgctagacgtgagggtgggtgttgaagtt 554  Q
    ||||||||||||||||||||| |||||  ||||||  ||| |||||| ||||| ||| ||||||||||    
T  25685825 gggttaaggattgcaatgtagaaattagacccaagtccacactagacatgaggatggatgttgaagtt 25685892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 547 - 625
Target Start/End: Complemental strand, 28843505 - 28843427
Alignment:
Q  547 ttgaagttatttgtagtttgttgttagtctcgtattgctcaaattttcggaatgttgagtatgtaaatatgtttgagta 625  Q
    |||||||| ||||||||||||| ||||| ||  || |||||| ||||||||  ||||||| | |||||||| |||||||    
T  28843505 ttgaagttgtttgtagtttgtttttagtttcacatcgctcaagttttcggaccgttgagtgtataaatatgcttgagta 28843427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 347 - 380
Target Start/End: Original strand, 30602338 - 30602371
Alignment:
Q  347 ttgaagttggttttaaagttgtttgtagtttgtt 380  Q
    |||||||||||||| |||||||||||||||||||    
T  30602338 ttgaagttggttttgaagttgtttgtagtttgtt 30602371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1432 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: scaffold1432
Description:

Target: scaffold1432; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 408 - 474
Target Start/End: Complemental strand, 998 - 932
Alignment:
Q  408 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacat 474  Q
    |||||||  ||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||    
T  998 taaatatgtttgagtatcctcatcctttgagtgagcttttgggatgagatttaagtctatttaacat 932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1432; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 545 - 672
Target Start/End: Complemental strand, 1063 - 936
Alignment:
Q  545 tgttgaagttatttgtagtttgttgttagtctcgtattgctcaa-attttcggaatgttgagtatgtaaatatgtttgagtaccctcatcttttgagcga 643  Q
    |||||||||| |||||||||||||||||||||| ||| |||||  ||  | ||  |||||| | | |||||||||||||||| ||||||| |||||| ||    
T  1063 tgttgaagttgtttgtagtttgttgttagtctcatatcgctcaggatcataggt-tgttgaatgtataaatatgtttgagtatcctcatcctttgagtga 965  T
Q  644 gcttttgggatgagatccaaatctattta 672  Q
    ||||||||||||||||  || ||||||||    
T  964 gcttttgggatgagatttaagtctattta 936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 8e-17; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 408 - 473
Target Start/End: Complemental strand, 32884591 - 32884526
Alignment:
Q  408 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaaca 473  Q
    |||||||  ||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||    
T  32884591 taaatatgtttgagtatcctcatcctttaagttagtttttgggatgaaattcaagactatttaaca 32884526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 408 - 503
Target Start/End: Original strand, 30525232 - 30525327
Alignment:
Q  408 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaat 503  Q
    |||||||  |||||||  ||||| ||||||| ||| |||||||||||||| ||||   |||||||||||||| ||||||| |||||||||||||||    
T  30525232 taaatatgtttgagtactctcattctttgagctagcttttgggatgagatacaagcacatttaacatggtatcagagtcgagttaaggattgcaat 30525327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 419 - 473
Target Start/End: Complemental strand, 32879747 - 32879693
Alignment:
Q  419 gagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaaca 473  Q
    ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  32879747 gagtaccctcatcctttaagttagtttttgggatgagattcaagactatttaaca 32879693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 524 - 672
Target Start/End: Original strand, 12704196 - 12704333
Alignment:
Q  524 cacgctagacgtgagggtgggtgttgaagttatttgtagtttgttgttagtctcgtattgctcaaattttcggaatgttgagtatgtaaatatgtttgag 623  Q
    |||||||| ||||||||||  |||||||||| |||||||||||||||||||| |  || ||||||||||    ||||       | ||||||||||||||    
T  12704196 cacgctaggcgtgagggtgaatgttgaagttgtttgtagtttgttgttagtcccacatcgctcaaattt---aaatg-------tataaatatgtttgag 12704285  T
Q  624 taccctcatcttttgagcgagcttttgggatgagatccaaatctattta 672  Q
    |||| |||||||||| || ||||||| |||| ||||||||| |||||||    
T  12704286 taccttcatcttttgtgctagctttt-ggataagatccaaacctattta 12704333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 601 - 664
Target Start/End: Original strand, 30525435 - 30525498
Alignment:
Q  601 ttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaa 664  Q
    |||||| | |||||||||||||||||| ||||||||||||| | ||||| ||||||||||||||    
T  30525435 ttgagtgtataaatatgtttgagtaccttcatcttttgagctacctttttggatgagatccaaa 30525498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 350 - 387
Target Start/End: Complemental strand, 28883788 - 28883751
Alignment:
Q  350 aagttggttttaaagttgtttgtagtttgttgttagtc 387  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  28883788 aagttggttttgaagttgtttgtagtttgttgttagtc 28883751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 610 - 659
Target Start/End: Original strand, 30525232 - 30525281
Alignment:
Q  610 taaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagat 659  Q
    ||||||||||||||||| |||||  ||||||| |||||||||||||||||    
T  30525232 taaatatgtttgagtactctcattctttgagctagcttttgggatgagat 30525281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 347 - 380
Target Start/End: Original strand, 42160370 - 42160403
Alignment:
Q  347 ttgaagttggttttaaagttgtttgtagtttgtt 380  Q
    |||||||||||||||||||||||| |||||||||    
T  42160370 ttgaagttggttttaaagttgtttatagtttgtt 42160403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 425 - 512
Target Start/End: Complemental strand, 36496279 - 36496192
Alignment:
Q  425 cctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgtaggaatt 512  Q
    |||||||| ||||| ||| ||||||||||||||||||| | |||| ||||||||| ||| |  | |||||||||||||||| ||||||    
T  36496279 cctcatccattgagctagcttttgggatgagattcaagcccatttcacatggtatcagacttcgattaaggattgcaatgtgggaatt 36496192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 464 - 513
Target Start/End: Original strand, 5473191 - 5473240
Alignment:
Q  464 ctatttaacatggtattagagtcgggttaaggattgcaatgtaggaatta 513  Q
    |||||||||||||||| |||||||| |||||||||| |||||||||||||    
T  5473191 ctatttaacatggtatcagagtcggattaaggattgtaatgtaggaatta 5473240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 419 - 498
Target Start/End: Complemental strand, 8745915 - 8745836
Alignment:
Q  419 gagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggatt 498  Q
    ||||||||||||||||| || ||  |||||||||||||| ||||   |||||||||| ||| ||||| ||||||||||||    
T  8745915 gagtatcctcatcctttaagctaacttttgggatgagatccaagctcatttaacatgatatcagagttgggttaaggatt 8745836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 663
Target Start/End: Complemental strand, 8745942 - 8745873
Alignment:
Q  594 cggaatgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaa 663  Q
    |||| |||||||| | |||||||||| ||||| ||||||| ||| ||| | |||||||||||||||||||    
T  8745942 cggactgttgagtgtataaatatgttcgagtatcctcatcctttaagctaacttttgggatgagatccaa 8745873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 408 - 469
Target Start/End: Original strand, 23972473 - 23972534
Alignment:
Q  408 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctattt 469  Q
    |||||||  ||||||| |||||||||||||||||  |||||| |||||||||||| ||||||    
T  23972473 taaatatgtttgagtaccctcatcctttgagttaacttttggaatgagattcaagcctattt 23972534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 440 - 493
Target Start/End: Complemental strand, 31495521 - 31495468
Alignment:
Q  440 tagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaa 493  Q
    ||||||||||||||||||||||   ||||| ||||||||||||||| |||||||    
T  31495521 tagtttttgggatgagattcaaacatattttacatggtattagagttgggttaa 31495468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 495
Target Start/End: Complemental strand, 33804356 - 33804305
Alignment:
Q  444 ttttgggatgagattcaagtctatttaacatggtattagagtcgggttaagg 495  Q
    ||||||||||||||||| | |||||||||||||||| ||||| | |||||||    
T  33804356 ttttgggatgagattcatgcctatttaacatggtatcagagttgagttaagg 33804305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 347 - 380
Target Start/End: Original strand, 5473274 - 5473307
Alignment:
Q  347 ttgaagttggttttaaagttgtttgtagtttgtt 380  Q
    |||||||||||||| |||||||||||||||||||    
T  5473274 ttgaagttggttttgaagttgtttgtagtttgtt 5473307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 420 - 505
Target Start/End: Complemental strand, 6720887 - 6720803
Alignment:
Q  420 agtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgt 505  Q
    |||| |||||||||||  | ||| |||||||||||||| |||| |||||||||||  | | |||| ||||||||| ||||||||||    
T  6720887 agtaccctcatcctttaggctagcttttgggatgagatacaaggctatttaacat-atctcagagccgggttaagaattgcaatgt 6720803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 610 - 659
Target Start/End: Original strand, 23972473 - 23972522
Alignment:
Q  610 taaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagat 659  Q
    |||||||||||||||||||||||| ||||||  | ||||||| |||||||    
T  23972473 taaatatgtttgagtaccctcatcctttgagttaacttttggaatgagat 23972522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 547 - 592
Target Start/End: Complemental strand, 29155842 - 29155797
Alignment:
Q  547 ttgaagttatttgtagtttgttgttagtctcgtattgctcaaattt 592  Q
    |||| ||||||| |||||||||||||||||| ||| ||||||||||    
T  29155842 ttgatgttatttatagtttgttgttagtctcatatagctcaaattt 29155797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 547 - 664
Target Start/End: Complemental strand, 41243330 - 41243213
Alignment:
Q  547 ttgaagttatttgtagtttgttgttagtctcgtattgctcaaattttcggaatgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagct 646  Q
    |||| ||| ||||||||||||| || ||| | ||||||| |  ||||| |  ||| |||| | |||||||  ||||||| |||||||  |||||| | ||    
T  41243330 ttgacgttgtttgtagtttgttatttgtcccatattgcttaggttttcaggttgtggagtctataaatatacttgagtaacctcatccgttgagctaact 41243231  T
Q  647 tttgggatgagatccaaa 664  Q
    ||||||||||||||||||    
T  41243230 tttgggatgagatccaaa 41243213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 41243267 - 41243218
Alignment:
Q  408 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagat 457  Q
    |||||||||||||||| |||||||| ||||| ||  ||||||||||||||    
T  41243267 taaatatacttgagtaacctcatccgttgagctaacttttgggatgagat 41243218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 426 - 551
Target Start/End: Complemental strand, 4169 - 4044
Alignment:
Q  426 ctcatcctttgagttagtttttgggatgagattcaagtct-atttaacatggtattagagtcgggttaaggattgcaatgtaggaattatccccaagctc 524  Q
    |||||| |||||| ||  ||||||||||||||  || ||| |||| ||||||||||||||| ||||||| || || |||||  |||||   | |||||||    
T  4169 ctcatcttttgagctatcttttgggatgagatctaa-tctcattttacatggtattagagttgggttaaagactgaaatgtgagaattggacacaagctc 4071  T
Q  525 acgctagacgtgagggtgggtgttgaa 551  Q
    | ||||| |||||||||||||||||||    
T  4070 atgctaggcgtgagggtgggtgttgaa 4044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 481 - 554
Target Start/End: Original strand, 4354 - 4427
Alignment:
Q  481 agagtcgggttaaggattgcaatgtaggaattatccccaagctcacgctagacgtgagggtgggtgttgaagtt 554  Q
    ||||||||||||| ||||||||||| ||||||   ||||| |||||||||| | |||||||| |||| ||||||    
T  4354 agagtcgggttaaagattgcaatgttggaattgaacccaatctcacgctaggcatgagggtgtgtgtcgaagtt 4427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 347 - 380
Target Start/End: Original strand, 4634 - 4667
Alignment:
Q  347 ttgaagttggttttaaagttgtttgtagtttgtt 380  Q
    |||||||||||||| |||||||||||||||||||    
T  4634 ttgaagttggttttgaagttgtttgtagtttgtt 4667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 351 - 389
Target Start/End: Original strand, 1062 - 1100
Alignment:
Q  351 agttggttttaaagttgtttgtagtttgttgttagtctt 389  Q
    |||||||||||||||||||||||||||||| || |||||    
T  1062 agttggttttaaagttgtttgtagtttgttatttgtctt 1100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 351 - 389
Target Start/End: Original strand, 3152 - 3190
Alignment:
Q  351 agttggttttaaagttgtttgtagtttgttgttagtctt 389  Q
    |||||||||||||||||||||||||||||| || |||||    
T  3152 agttggttttaaagttgtttgtagtttgttatttgtctt 3190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 610 - 664
Target Start/End: Original strand, 10742262 - 10742316
Alignment:
Q  610 taaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaa 664  Q
    |||||||||||| ||||||| ||| |||||   ||||||||||||||||||||||    
T  10742262 taaatatgtttgggtaccctaatcatttgatttagcttttgggatgagatccaaa 10742316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 351 - 389
Target Start/End: Original strand, 11339963 - 11340001
Alignment:
Q  351 agttggttttaaagttgtttgtagtttgttgttagtctt 389  Q
    |||||||||||||||||||||||||||||| || |||||    
T  11339963 agttggttttaaagttgtttgtagtttgttatttgtctt 11340001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 560 - 654
Target Start/End: Original strand, 27134291 - 27134385
Alignment:
Q  560 tagtttgttgttagtctcgtattgctcaaattttcggaatgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagcttttgggat 654  Q
    ||||||||||||||||||  |||||| | ||| |||   |||||||| | ||||||||||||||||| | ||||| ||||   ||||||||||||    
T  27134291 tagtttgttgttagtctcacattgcttagattctcgagttgttgagtgtataaatatgtttgagtactcacatctattgaatcagcttttgggat 27134385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 347 - 380
Target Start/End: Original strand, 6728575 - 6728608
Alignment:
Q  347 ttgaagttggttttaaagttgtttgtagtttgtt 380  Q
    |||||||||||||||||||||||| |||||||||    
T  6728575 ttgaagttggttttaaagttgtttatagtttgtt 6728608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 425 - 502
Target Start/End: Original strand, 12425715 - 12425792
Alignment:
Q  425 cctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaa 502  Q
    ||||||| ||| || || |||||| ||||||||||||  | |||||||||||||| ||||||| ||| || |||||||    
T  12425715 cctcatcatttaagctaatttttgtgatgagattcaatcccatttaacatggtatcagagtcgagttgagtattgcaa 12425792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University