View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11723_high_7 (Length: 562)
Name: NF11723_high_7
Description: NF11723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11723_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 54 - 553
Target Start/End: Complemental strand, 32553685 - 32553186
Alignment:
| Q |
54 |
ttaattacttcaagcaggaaaagcattttgtcccaatgcaaagagaaccatgaagttataccataaatagttctactgccacaaaagaaagagtatgtgc |
153 |
Q |
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| T |
32553685 |
ttaattacttcaagcaggaaaagcattttgtcccaatgcaaagagaaccatgaagttataccataaatagttctactgccacaaaagaaagagtatgtgc |
32553586 |
T |
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| Q |
154 |
aggcttcagacgaagaacattccgttttccgtatcaggatgcagcttgtaaaaccctggatcatttgaaattgaggcggtggatgaaatggatgaagaag |
253 |
Q |
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| T |
32553585 |
aggcttcagacgaagaacattccgttttccgtatcaggatgcagcttgtaaaaccctggatcatttgaaattgaggcggtggatgaaatggatgaagaag |
32553486 |
T |
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| Q |
254 |
ctaaaggtgatgatgaagaagatacagttgaatatggagattgagttgacatctttgcttcatagtatagtcttcctctgtaagcagcaaggtcagcata |
353 |
Q |
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| T |
32553485 |
ctaaaggtgatgatgaagaagatacagttgaatatggagattgagttgacatctttgcttcatagtatagtcttcctctgtaagcagcaaggtcagcata |
32553386 |
T |
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| Q |
354 |
gtacacgggagggactaaagatacaggtttagtgcaccttgcaaaggtaaagcacatatcatatatgagcttctgcaaattatcagaagtaaacctgtgc |
453 |
Q |
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| T |
32553385 |
gtacactggagggactaaagatacaggtttagtgcaccttgcaaaggtaaagcacatatcatatatgagcttctgcaaattatcagaagtaaacctgtgc |
32553286 |
T |
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| Q |
454 |
tcatcccacaagacatgatagtgagtgggcttgcttgtacctaggcttccatagtgactacacaggtaaaagtcaaattcaaaaggatgtacgacctttg |
553 |
Q |
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| T |
32553285 |
tcatcccacaagacatgatagtgagtgggcttgcttgtacctaggcttccatagtgactacacaggtaaaagtcaaattcaaaaggatgtacgacctttg |
32553186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 1e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 305 - 536
Target Start/End: Original strand, 10753575 - 10753806
Alignment:
| Q |
305 |
tctttgcttcatagtatagtcttcctctgtaagcagcaaggtcagcatagtacacgggagggactaaagatacaggtttagtgcaccttgcaaaggtaaa |
404 |
Q |
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| T |
10753575 |
tctttgcttcgtggtataatcgtcctctataagcagcaaggtcagcataatacacaggagggactagagacacaggtttagtgcaccttgcaaaggtgaa |
10753674 |
T |
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| Q |
405 |
gcacatatcatatatgagcttctgcaaattatcagaagtaaacctgtgctcatcccacaagacatgatagtgagtgggcttgcttgtacctaggcttcca |
504 |
Q |
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| T |
10753675 |
gcacatctcataaataagtttctgcaattcatcagatgtaaacttgtgctcatcccataaaacatgatagtgggtgggcttgcttgtacctaggcttcca |
10753774 |
T |
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| Q |
505 |
tagtgactacacaggtaaaagtcaaattcaaa |
536 |
Q |
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| T |
10753775 |
tagtaactacaaaggtaaaagtcaaactcaaa |
10753806 |
T |
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