View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11723_low_10 (Length: 519)
Name: NF11723_low_10
Description: NF11723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11723_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 17 - 508
Target Start/End: Complemental strand, 32119863 - 32119372
Alignment:
| Q |
17 |
aagaccatttcccaaccattattggaggaaccatgtacaacaaatagttaccaatttgagatttcccaacctattgttctcaatcaaacaactgtctcat |
116 |
Q |
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| T |
32119863 |
aagaccatttcccaaccatcattggaggaaccatgtacagctaatagttaccaatttgcgatttcccaacctattgttctcaatcaaacaactgtctcat |
32119764 |
T |
|
| Q |
117 |
atggcagtctatctttagatttataagtgtggcaggaatgcttgctgagtgttttaagttcaaaaacagttgtttatgttattcatcaagttgagttctt |
216 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32119763 |
atggaagtctatctttagatttataagtgtggcaggaatgcttgctgagtgttttaagttcaaaaacagttgtttatgttattcatcaagtgaagttctt |
32119664 |
T |
|
| Q |
217 |
acctactgctgctaaccttatattggtgagtatttattgttattctgtaggtcatgaaacatggaaaagttactcaaagtggaaagtatgcggatcttct |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||| |||||||| |
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| T |
32119663 |
acctactgctgctaaccttatattggtgagtatttattgttattctgtaggtcatgaaagatggaaaaattactc--agtggaaagtatgccgatcttct |
32119566 |
T |
|
| Q |
317 |
ca--attggaaccgattttatggaacttcttggtgaaaaacatctaatgaaataagtacattataagacagctactatactcttcaagaaaatgcacttt |
414 |
Q |
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|| ||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32119565 |
caacattggaaccaattttatggaacttcttggtgaaaaacttctaatgaaataaggacattataagacagctcctatactcttcaagaaaatgcacttt |
32119466 |
T |
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| Q |
415 |
tgcatctttcgtgcccccgtataatttttcaattctactccaagtggacggatctttaatagactatgtcatagttccgttctttccgtttctt |
508 |
Q |
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| T |
32119465 |
tacatctttcgcgcccccgtataatttttcaattctactccaagtggacagatctttaatagagtatgtcatagttccgttctttccgtttctt |
32119372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 143 - 262
Target Start/End: Original strand, 14373359 - 14373475
Alignment:
| Q |
143 |
gtgtggcaggaatgcttgctgagtgttttaagttcaaaaacagttgtttatgttattcatcaagttgagttcttacctactgctgctaaccttatattgg |
242 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
14373359 |
gtgtggcaggaatgcttgctgagtgttctaagttcaaaaacagttgtttatgttactcatcaagtggagttcttacctactgctg---accttatattgg |
14373455 |
T |
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| Q |
243 |
tgagtatttattgttattct |
262 |
Q |
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|||||||||||||||||||| |
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| T |
14373456 |
tgagtatttattgttattct |
14373475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 143 - 253
Target Start/End: Complemental strand, 14239989 - 14239882
Alignment:
| Q |
143 |
gtgtggcaggaatgcttgctgagtgttttaagttcaaaaacagttgtttatgttattcatcaagttgagttcttacctactgctgctaaccttatattgg |
242 |
Q |
| |
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|||| |||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
14239989 |
gtgttgcaggaatgcttgctgggtgttttaagctcaaaaacagttgtttatgttactcatcaagtggagttcttacctactgctg---accttatattgg |
14239893 |
T |
|
| Q |
243 |
tgagtatttat |
253 |
Q |
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||||||||||| |
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| T |
14239892 |
tgagtatttat |
14239882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 143 - 253
Target Start/End: Complemental strand, 41451046 - 41450939
Alignment:
| Q |
143 |
gtgtggcaggaatgcttgctgagtgttttaagttcaaaaacagttgtttatgttattcatcaagttgagttcttacctactgctgctaaccttatattgg |
242 |
Q |
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|||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
41451046 |
gtgtggcaggaatgcttgctcggtgttttaagctcaaaaacagttgtttatgttactcatcaagtggagttcttacctactgctg---accttatattgg |
41450950 |
T |
|
| Q |
243 |
tgagtatttat |
253 |
Q |
| |
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||||||||||| |
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| T |
41450949 |
tgagtatttat |
41450939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 143 - 253
Target Start/End: Complemental strand, 41437822 - 41437715
Alignment:
| Q |
143 |
gtgtggcaggaatgcttgctgagtgttttaagttcaaaaacagttgtttatgttattcatcaagttgagttcttacctactgctgctaaccttatattgg |
242 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||| ||||| ||||||||||||||||||| ||||||||| || |
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| T |
41437822 |
gtgtggcaggaatgcttgctgggtgttttaagctcaaaaacagttgtttatgttactcaccaagtggagttcttacctactgctg---accttatatcgg |
41437726 |
T |
|
| Q |
243 |
tgagtatttat |
253 |
Q |
| |
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||||||||||| |
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| T |
41437725 |
tgagtatttat |
41437715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 390 - 487
Target Start/End: Original strand, 14374918 - 14375015
Alignment:
| Q |
390 |
tatactcttcaagaaaatgcacttttgcatctttcgtgcccccgtataatttttcaattctactccaagtggacggatctttaatagactatgtcata |
487 |
Q |
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|||||||||||| ||||||||||| || |||||||| |||||| | | ||||||| ||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
14374918 |
tatactcttcaaaaaaatgcacttgtgtatctttcgcgcccccatgtcatttttcgattctactccaagtggacggatccttaatagagtatgtcata |
14375015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 375 - 507
Target Start/End: Complemental strand, 14239276 - 14239144
Alignment:
| Q |
375 |
ttataagacagctactatactcttcaagaaaatgcacttttgcatctttcgtgcccccgtataatttttcaattctactccaagtggacggatctttaat |
474 |
Q |
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|
||||||||||||||||||||||||||| ||||||||||| ||||| || |||||||| | | |||||| ||||||||||||||||||| ||| | ||| |
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| T |
14239276 |
ttataagacagctactatactcttcaataaaatgcacttgtgcattttccgtgccccgatgtcattttttgattctactccaagtggacgaatcctcaat |
14239177 |
T |
|
| Q |
475 |
agactatgtcatagttccgttctttccgtttct |
507 |
Q |
| |
|
||| ||||||||| | | || ||||||||||| |
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| T |
14239176 |
agagtatgtcatactggcattttttccgtttct |
14239144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 375 - 487
Target Start/End: Complemental strand, 41437125 - 41437013
Alignment:
| Q |
375 |
ttataagacagctactatactcttcaagaaaatgcacttttgcatctttcgtgcccccgtataatttttcaattctactccaagtggacggatctttaat |
474 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||| || |||||||| | | ||||| |||||||||||||||| || ||| ||||| |
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| T |
41437125 |
ttataagacagctactatactcttcaataaaatgcacttgtgcattttccgtgccccgatgtcgttttttgattctactccaagtggtcgaatccttaat |
41437026 |
T |
|
| Q |
475 |
agactatgtcata |
487 |
Q |
| |
|
||| ||||||||| |
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|
| T |
41437025 |
agagtatgtcata |
41437013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 375 - 485
Target Start/End: Complemental strand, 41450351 - 41450241
Alignment:
| Q |
375 |
ttataagacagctactatactcttcaagaaaatgcacttttgcatctttcgtgcccccgtataatttttcaattctactccaagtggacggatctttaat |
474 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||| || |||||||| | | ||||| |||||||||||||||| || ||| ||||| |
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| T |
41450351 |
ttataagacagctactatactcttcaataaaatgcacttgtgcattttccgtgccccgatgtcgttttttgattctactccaagtggtcgaatccttaat |
41450252 |
T |
|
| Q |
475 |
agactatgtca |
485 |
Q |
| |
|
||| ||||||| |
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|
| T |
41450251 |
agagtatgtca |
41450241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 264 - 342
Target Start/End: Complemental strand, 14239815 - 14239735
Alignment:
| Q |
264 |
taggtcatgaaacatggaaaagttactcaaagtggaaagtatgcggatcttctca--attggaaccgattttatggaactt |
342 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||| ||||| || | ||||| || ||||||||||||||| |
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|
| T |
14239815 |
taggtcatgaaagatggaaaaattactcaaagtggaaagtatgctgatctgcttaacattgggactgattttatggaactt |
14239735 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 349
Target Start/End: Complemental strand, 41437646 - 41437559
Alignment:
| Q |
264 |
taggtcatgaaacatggaaaagttactcaaagtggaaagtatgcggatcttctca--attggaaccgattttatggaacttcttggtg |
349 |
Q |
| |
|
|||||||||||| | || ||| |||||||||||||||||||||| ||||| || | ||||| || ||||||||||||||| |||||| |
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|
| T |
41437646 |
taggtcatgaaagacgggaaaattactcaaagtggaaagtatgccgatctgcttaacattgggactgattttatggaacttgttggtg |
41437559 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 349
Target Start/End: Complemental strand, 41450872 - 41450785
Alignment:
| Q |
264 |
taggtcatgaaacatggaaaagttactcaaagtggaaagtatgcggatcttctca--attggaaccgattttatggaacttcttggtg |
349 |
Q |
| |
|
|||||||||||| | || |||||||||||||||||||||||||| ||||| || | ||||| || || |||||||||||| |||||| |
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| T |
41450872 |
taggtcatgaaagacgggaaagttactcaaagtggaaagtatgccgatctgcttaacattgggactgactttatggaacttgttggtg |
41450785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 377
Target Start/End: Complemental strand, 14239685 - 14239657
Alignment:
| Q |
349 |
gaaaaacatctaatgaaataagtacatta |
377 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
14239685 |
gaaaaacatctaatgaaataagtacatta |
14239657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 246
Target Start/End: Complemental strand, 22750012 - 22749918
Alignment:
| Q |
149 |
caggaatgcttgctgagtgttttaagttcaaaaacagttgtttatgttattcatcaagttgagttcttacctactgctgctaaccttatattggtgag |
246 |
Q |
| |
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|||||||||||||||| ||||||||||||| ||||| | ||||| | |||||||| |||||||||| |||||||| ||||||| |||||||| |
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| T |
22750012 |
caggaatgcttgctgaaacttttaagttcaaagacagtgatctatgtcacacatcaagtagagttcttac---ctgctgctgaccttatcttggtgag |
22749918 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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