View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11723_low_11 (Length: 518)

Name: NF11723_low_11
Description: NF11723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11723_low_11
NF11723_low_11
[»] chr3 (2 HSPs)
chr3 (1-500)||(38521374-38521881)
chr3 (445-499)||(47864822-47864876)
[»] chr5 (2 HSPs)
chr5 (413-501)||(19279650-19279738)
chr5 (415-500)||(23419106-23419191)
[»] scaffold0466 (1 HSPs)
scaffold0466 (437-500)||(158-221)
[»] chr6 (3 HSPs)
chr6 (421-500)||(22747209-22747288)
chr6 (437-500)||(5188320-5188383)
chr6 (413-453)||(15134793-15134833)
[»] chr1 (5 HSPs)
chr1 (411-501)||(50377692-50377781)
chr1 (409-500)||(26450805-26450896)
chr1 (279-332)||(36695972-36696025)
chr1 (279-332)||(36712073-36712126)
chr1 (413-453)||(33737072-33737112)
[»] chr8 (5 HSPs)
chr8 (411-499)||(41407450-41407539)
chr8 (417-499)||(43417661-43417743)
chr8 (413-499)||(40216607-40216693)
chr8 (411-500)||(25140882-25140971)
chr8 (432-500)||(20765852-20765920)
[»] scaffold1940 (1 HSPs)
scaffold1940 (413-500)||(787-874)
[»] chr4 (4 HSPs)
chr4 (415-500)||(45548945-45549030)
chr4 (409-500)||(16530082-16530173)
chr4 (406-500)||(12832239-12832333)
chr4 (411-500)||(3533791-3533880)
[»] chr2 (2 HSPs)
chr2 (432-500)||(9032471-9032539)
chr2 (414-493)||(38935479-38935557)
[»] scaffold0006 (1 HSPs)
scaffold0006 (411-500)||(178136-178224)
[»] chr7 (1 HSPs)
chr7 (415-500)||(1706321-1706406)
[»] scaffold0001 (1 HSPs)
scaffold0001 (432-500)||(428502-428570)


Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Original strand, 38521374 - 38521881
Alignment:
Q  1 atcctaaatccgttgtcgattagaaagaagctaaaaacacctacctctcaaggaaatggcactcttcaaaagtcatgatcatcgactaggattatacttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  38521374 atcctaaatccgttgtcgattagaaagaagctaaaaacacctacctctcaaggaaatgacactcttcaaaagtcatgatcatcgactaggattatacttt 38521473  T
Q  101 cttacccttgcag-------ttaggacttaggacaccaaaatgtaatattgttattgttccaaagcacttgatagagtgtatttacannnnnnnaggaga 193  Q
    |||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||    
T  38521474 cttacccttgcagttaggacttaggacttaggacaccaaaatgtaatattgttattgttccaaagcacttgatagagtgtatttacatttttttaggaga 38521573  T
Q  194 atgcatttacaggagaggaacttctctagcagtttttgttgttgtgctggcatccaaacccttaattatannnnnnnnnnnntcataacattaaaaacac 293  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||            ||||||||||||||||||    
T  38521574 atgcatttaaaggagaggaacttctctagcagtttttgttgttgtgctggcatctaaacccttaattatactctctctcttttcataacattaaaaacac 38521673  T
Q  294 cttctttcacttttataatggatagtaaagatcacacttcagagnnnnnnnntagagacaatctccttcgagtatttgattagaataattttttaaa-gg 392  Q
    ||||||||||||||||||||||||||||||||||||||| ||||        ||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  38521674 cttctttcacttttataatggatagtaaagatcacacttgagagaaaaaaaatagagacaatctccttcgagtatttcattagaataattttttaaaggg 38521773  T
Q  393 tcatgctaacttatgtcataagaccatccacaacagaataccctaaattggatgcttaaatgaattttctatatccacctcactcattttatggtaatac 492  Q
    |||||||||||| |||||||||| |||||||||||||||| ||||||||| ||| |||||||||||  ||||||||||||||||||||||||||||||||    
T  38521774 tcatgctaacttgtgtcataagatcatccacaacagaatatcctaaattgaatgtttaaatgaattccctatatccacctcactcattttatggtaatac 38521873  T
Q  493 ttaataag 500  Q
    ||||||||    
T  38521874 ttaataag 38521881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 499
Target Start/End: Original strand, 47864822 - 47864876
Alignment:
Q  445 tgcttaaatgaattttctatatccacctcactcattttatggtaatacttaataa 499  Q
    ||||||||| |||||| ||| || || |||||||||||| |||||||||||||||    
T  47864822 tgcttaaattaattttatatgtctacatcactcattttacggtaatacttaataa 47864876  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 413 - 501
Target Start/End: Complemental strand, 19279738 - 19279650
Alignment:
Q  413 agaccatccacaacagaataccctaaattggatgcttaaatgaattttctatatccacctcactcattttatggtaatacttaataagt 501  Q
    ||||||||||||||||| ||||||||||||| |||||||||  | ||  ||| ||||| ||||||||||||  |||| |||||||||||    
T  19279738 agaccatccacaacagagtaccctaaattgggtgcttaaatttaattcatatgtccacatcactcattttaccgtaacacttaataagt 19279650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 500
Target Start/End: Complemental strand, 23419191 - 23419106
Alignment:
Q  415 accatccacaacagaataccctaaattggatgcttaaatgaattttctatatccacctcactcattttatggtaatacttaataag 500  Q
    |||||||| || |||  ||| |||||||| ||||||||| |||||  ||| ||||| ||||| ||||||  |||||||||||||||    
T  23419191 accatccataatagagcaccttaaattgggtgcttaaattaatttcatatgtccacatcacttattttacagtaatacttaataag 23419106  T

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Target: scaffold0466 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 437 - 500
Target Start/End: Original strand, 158 - 221
Alignment:
Q  437 aaattggatgcttaaatgaattttctatatccacctcactcattttatggtaatacttaataag 500  Q
    ||||||| ||||||||||  |  |||||||||||||||||||||||| ||||||||||||||||    
T  158 aaattgggtgcttaaatgggtcctctatatccacctcactcattttacggtaatacttaataag 221  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 421 - 500
Target Start/End: Complemental strand, 22747288 - 22747209
Alignment:
Q  421 cacaacagaataccctaaattggatgcttaaatgaattttctatatccacctcactcattttatggtaatacttaataag 500  Q
    ||||||||| |||| |||| ||||| ||||||| |||||  ||| ||||| |||||||||||| ||||||||||||||||    
T  22747288 cacaacagagtaccttaaactggatacttaaattaatttcatatctccacatcactcattttacggtaatacttaataag 22747209  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 500
Target Start/End: Complemental strand, 5188383 - 5188320
Alignment:
Q  437 aaattggatgcttaaatgaattttctatatccacctcactcattttatggtaatacttaataag 500  Q
    ||||| ||||||||||||  |||| ||||| ||| ||||| |||||||||||||| ||||||||    
T  5188383 aaattagatgcttaaatgggttttttatatacacatcacttattttatggtaatatttaataag 5188320  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 413 - 453
Target Start/End: Original strand, 15134793 - 15134833
Alignment:
Q  413 agaccatccacaacagaataccctaaattggatgcttaaat 453  Q
    |||||||||||||||||  |||||||||||| |||||||||    
T  15134793 agaccatccacaacagagcaccctaaattgggtgcttaaat 15134833  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 411 - 501
Target Start/End: Original strand, 50377692 - 50377781
Alignment:
Q  411 taagaccatccacaacagaataccctaaattggatgcttaaatgaattttctatatccacctcactcattttatggtaatacttaataagt 501  Q
    |||||||||||||||||||  | || ||||||| ||||||||||| | || ||| ||||| |||| ||||||| |||||||||||||||||    
T  50377692 taagaccatccacaacagagcatcc-aaattgggtgcttaaatgagtcttttatgtccacatcacccattttacggtaatacttaataagt 50377781  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 409 - 500
Target Start/End: Original strand, 26450805 - 26450896
Alignment:
Q  409 cataagaccatccacaacagaataccctaaattggatgcttaaatgaattttctatatccacctcactcattttatggtaatacttaataag 500  Q
    |||||||||||| |||||| |  ||| |||| | | ||||||||| |||||  ||| ||||| |||||||||||||| ||||||||||||||    
T  26450805 cataagaccatctacaacatagcaccttaaacttggtgcttaaattaatttcatatgtccacatcactcattttatgctaatacttaataag 26450896  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 332
Target Start/End: Complemental strand, 36696025 - 36695972
Alignment:
Q  279 taacattaaaaacaccttctttcacttttataatggatagtaaagatcacactt 332  Q
    ||||||||||||||| |||| ||||||||||||||||  |  ||||||||||||    
T  36696025 taacattaaaaacacattctctcacttttataatggacggcgaagatcacactt 36695972  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 332
Target Start/End: Complemental strand, 36712126 - 36712073
Alignment:
Q  279 taacattaaaaacaccttctttcacttttataatggatagtaaagatcacactt 332  Q
    ||||||||||||||| |||| ||||||||||||||||  |  ||||||||||||    
T  36712126 taacattaaaaacacattctctcacttttataatggacggcgaagatcacactt 36712073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 413 - 453
Target Start/End: Original strand, 33737072 - 33737112
Alignment:
Q  413 agaccatccacaacagaataccctaaattggatgcttaaat 453  Q
    |||||||||||||||||  | ||||||||||||||||||||    
T  33737072 agaccatccacaacagagcatcctaaattggatgcttaaat 33737112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 411 - 499
Target Start/End: Complemental strand, 41407539 - 41407450
Alignment:
Q  411 taagaccatccacaacagaataccctaaatt-ggatgcttaaatgaattttctatatccacctcactcattttatggtaatacttaataa 499  Q
    |||||| ||||||||||||  ||||| |||  |||||||||||| |||||  ||||||||| ||||| |||||| |||||||||||||||    
T  41407539 taagactatccacaacagagcacccttaatccggatgcttaaattaatttcatatatccacatcacttattttacggtaatacttaataa 41407450  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 499
Target Start/End: Original strand, 43417661 - 43417743
Alignment:
Q  417 catccacaacagaataccctaaattggatgcttaaatgaattttctatatccacctcactcattttatggtaatacttaataa 499  Q
    |||||||||||||  |||  ||||||| ||||||||||  || |||| |||||| |||||||||||| |||||| ||||||||    
T  43417661 catccacaacagagcacctcaaattgggtgcttaaatgggttctctacatccacatcactcattttacggtaattcttaataa 43417743  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 499
Target Start/End: Complemental strand, 40216693 - 40216607
Alignment:
Q  413 agaccatccacaacagaataccctaaattggatgcttaaatgaattttctatatccacctcactcattttatggtaatacttaataa 499  Q
    |||||||||||||||||  |||||||||||| |||||||||  | ||  ||  ||||| ||||||||||||   |||||||||||||    
T  40216693 agaccatccacaacagagcaccctaaattgggtgcttaaattgaattcatacgtccacatcactcattttactataatacttaataa 40216607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 500
Target Start/End: Original strand, 25140882 - 25140971
Alignment:
Q  411 taagaccatccacaacagaataccctaaattggatgcttaaatgaattttctatatccacctcactcattttatggtaatacttaataag 500  Q
    |||||||||| |||||| || ||  ||||||| |||||||||| || ||  ||| ||||  ||||| |||||| ||||||||||||||||    
T  25140882 taagaccatctacaacaaaacactttaaattgaatgcttaaattaaattcatatgtccatatcacttattttacggtaatacttaataag 25140971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 500
Target Start/End: Complemental strand, 20765920 - 20765852
Alignment:
Q  432 accctaaattggatgcttaaatgaattttctatatccacctcactcattttatggtaatacttaataag 500  Q
    |||| ||||||| ||||||||| || ||  ||| ||||| ||||||||||||  |||||||||||||||    
T  20765920 acccaaaattgggtgcttaaattaaattcatatgtccacatcactcattttaccgtaatacttaataag 20765852  T

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Target: scaffold1940 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold1940
Description:

Target: scaffold1940; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 413 - 500
Target Start/End: Complemental strand, 874 - 787
Alignment:
Q  413 agaccatccacaacagaataccctaaattggatgcttaaatgaattttctatatccacctcactcattttatggtaatacttaataag 500  Q
    ||||||||| |||||||  |||||||||| | |||||| ||  ||||  ||| ||||| ||| |||||||||||||||||||||||||    
T  874 agaccatcctcaacagagcaccctaaattaggtgcttacatttatttcatatgtccacatcattcattttatggtaatacttaataag 787  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 415 - 500
Target Start/End: Original strand, 45548945 - 45549030
Alignment:
Q  415 accatccacaacagaataccctaaattggatgcttaaatgaattttctatatccacctcactcattttatggtaatacttaataag 500  Q
    ||||||||||||| |  |||||||||| | || ||| ||  ||||| ||| ||||| |||||||||||| ||||||||||||||||    
T  45548945 accatccacaacatatcaccctaaattaggtgtttatatttattttatatgtccacatcactcattttacggtaatacttaataag 45549030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 500
Target Start/End: Complemental strand, 16530173 - 16530082
Alignment:
Q  409 cataagaccatccacaacagaataccctaaattggatgcttaaatgaattttctatatccacctcactcattttatggtaatacttaataag 500  Q
    ||||||||||||||||||| || ||  |||||||  |||||||||  | ||  |||| |||| ||||||||||||  |||||||||||||||    
T  16530173 cataagaccatccacaacaaaacactttaaattgagtgcttaaattgaattcatatacccacatcactcattttaccgtaatacttaataag 16530082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 406 - 500
Target Start/End: Original strand, 12832239 - 12832333
Alignment:
Q  406 tgtcataagaccatccacaacagaataccctaaattggatgcttaaatgaattttctatatccacctcactcattttatggtaatacttaataag 500  Q
    |||| |||||||||||||||||||  | |||||||||| |||||||||  | ||  ||| ||||| |||||||| |||  |||||||||| ||||    
T  12832239 tgtcttaagaccatccacaacagagcatcctaaattgggtgcttaaattgaattcatatgtccacatcactcatgttaccgtaatacttagtaag 12832333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 500
Target Start/End: Original strand, 3533791 - 3533880
Alignment:
Q  411 taagaccatccacaacagaataccctaaattggatgcttaaatgaattttctatatccacctcactcattttatggtaatacttaataag 500  Q
    |||||| |||||||||| |  | |||||||| | |||||| ||  ||||  ||| ||||| |||||||||||| ||||||||||||||||    
T  3533791 taagacaatccacaacatagcatcctaaattaggtgcttacatttatttcatatgtccacatcactcattttacggtaatacttaataag 3533880  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 500
Target Start/End: Original strand, 9032471 - 9032539
Alignment:
Q  432 accctaaattggatgcttaaatgaattttctatatccacctcactcattttatggtaatacttaataag 500  Q
    ||||||||||||||||||| || || ||| ||| ||||| ||||| ||||||  |||||||||||||||    
T  9032471 accctaaattggatgcttacattaaatttgtatgtccacatcacttattttaccgtaatacttaataag 9032539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 493
Target Start/End: Complemental strand, 38935557 - 38935479
Alignment:
Q  414 gaccatccacaacagaataccctaaattggatgcttaaatgaattttctatatccacctcactcattttatggtaatact 493  Q
    |||||||| |||||||  || |||||||| |||||||||||  ||| |||||||||| ||||| |||||| |||||||||    
T  38935557 gaccatccgcaacagagcactctaaattgaatgcttaaatgggttt-ctatatccacatcacttattttacggtaatact 38935479  T

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Target: scaffold0006 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 500
Target Start/End: Original strand, 178136 - 178224
Alignment:
Q  411 taagaccatccacaacagaataccctaaattggatgcttaaatgaattttctatatccacctcactcattttatggtaatacttaataag 500  Q
    |||||||||| |||||| |  |||||||||||| |||||||||  | ||  ||| ||||| ||||||||||||  |||||||||||||||    
T  178136 taagaccatc-acaacacagcaccctaaattgggtgcttaaattgaattcatatgtccacatcactcattttaccgtaatacttaataag 178224  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 500
Target Start/End: Original strand, 1706321 - 1706406
Alignment:
Q  415 accatccacaacagaataccctaaattggatgcttaaatgaattttctatatccacctcactcattttatggtaatacttaataag 500  Q
    |||||||||||||||  ||| |||||||| || |||||| || ||  ||| ||||| ||||||||||||  || ||||||||||||    
T  1706321 accatccacaacagagcaccttaaattgggtgtttaaattaaattcatatgtccacatcactcattttaccgtcatacttaataag 1706406  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 500
Target Start/End: Complemental strand, 428570 - 428502
Alignment:
Q  432 accctaaattggatgcttaaatgaattttctatatccacctcactcattttatggtaatacttaataag 500  Q
    ||||||||||||||||||||||  | ||  ||| ||||| ||| ||||||||  |||||||||||||||    
T  428570 accctaaattggatgcttaaatttaattcatatgtccacatcaatcattttaatgtaatacttaataag 428502  T

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