View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11723_low_12 (Length: 413)
Name: NF11723_low_12
Description: NF11723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11723_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 395
Target Start/End: Complemental strand, 2289750 - 2289366
Alignment:
| Q |
18 |
ctttggacgctgttgtttctgaaaaacccaaagaggaagcaccagttgaattggagaaagaaaatggtacagctgatagcagttataagcaagagaaatc |
117 |
Q |
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| T |
2289750 |
ctttggacgctgttgttgctgaaaaacccaaagaggaagcaccagttgaattggagaaagaaaatggtacagctgatagcagttataagcaagagaaatc |
2289651 |
T |
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| Q |
118 |
cggcgcagaggaaagcgaaggtgctgagaaagtgagt---aatgttgaagatattattcatggtaagaatgaaatttcagcaagtgatgaatagcaaaca |
214 |
Q |
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| T |
2289650 |
cggcgcagaggaaagcgaaggtgctgagaaagtgagtctcaatgttgaagatattattaatggtaagaatgaaatttcagcaagtgatgaatagcaaaca |
2289551 |
T |
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| Q |
215 |
attcaaggtgatgaacaggtgaagaaaatggttgataatgaaagtgttatttggagctttgctcaatgaagtagcttagtatcactagttaatacttggt |
314 |
Q |
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| T |
2289550 |
gttcaaggtgatgaacaggtgaagaaaatggttgataatgaaagtgttatttggagctttgctcaatgaagtagcttagtatcactagttaatacttagt |
2289451 |
T |
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| Q |
315 |
gcttc----nnnnnnnnnngcaaagcttggtagttaggttcttatatgcactttatcaatacttagtgcccttaacttttctgtg |
395 |
Q |
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| T |
2289450 |
gcttctttttttttttgttgcaaagcttggtagtaagctttttatatgcactttatcaatactttgtgcccttaacttttttgtg |
2289366 |
T |
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