View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11723_low_13 (Length: 384)

Name: NF11723_low_13
Description: NF11723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11723_low_13
NF11723_low_13
[»] chr5 (2 HSPs)
chr5 (19-374)||(33561724-33562095)
chr5 (304-353)||(17060424-17060473)
[»] chr2 (16 HSPs)
chr2 (19-374)||(39162718-39163076)
chr2 (19-374)||(39206118-39206476)
chr2 (262-374)||(39223408-39223520)
chr2 (259-374)||(39196886-39197000)
chr2 (19-99)||(39388229-39388309)
chr2 (268-353)||(39380873-39380959)
chr2 (262-367)||(39387877-39387985)
chr2 (19-100)||(39197223-39197304)
chr2 (270-367)||(39370818-39370916)
chr2 (171-227)||(39197037-39197093)
chr2 (305-365)||(39473131-39473191)
chr2 (268-365)||(39216356-39216454)
chr2 (304-353)||(39152819-39152868)
chr2 (306-353)||(44624577-44624624)
chr2 (306-359)||(44895474-44895527)
chr2 (129-173)||(39388110-39388154)
[»] chr8 (1 HSPs)
chr8 (295-364)||(45342744-45342814)


Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 19 - 374
Target Start/End: Original strand, 33561724 - 33562095
Alignment:
Q  19 tttagagaaaatgctatctagttttgtataacatggcagattggtcatataaaattgtcccatgaagagcttgtttagcaacgaccagcatccagcatta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33561724 tttagagaaaatgctatctagttttgtataacatggcagattggtcatataaaattgtcccatgaagagcttgtttagcaacgaccagcatccagcatta 33561823  T
Q  119 gagcttgttccatgactttccctagattatctgtaaaactcaacaccagcat----------------ccaagatctagttcattccaatatttagtatt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||||||||    
T  33561824 gagcttgttccatgactttccctagattatctgtaaaactcaacaccagcatccaacatctttactcgccaagatctagttcattccaatatttagtatt 33561923  T
Q  203 aatgcagccttaactcatcaatgtcattcttgcatactatannnnnnnnnnnnnnnaattcttactgtcactatcatttactgatgtttctataaatatg 302  Q
    |||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||||||||||||||||||    
T  33561924 aatgcagccttaactcatcaatgtcattcttgcatactatatttttttattttcttaattcttactgtcactatcatttactgatgtttctataaatatg 33562023  T
Q  303 aagagcttaaatatctactatctaaatatgcagttgcatcttacatggatggtcaatcaagtcgtgcctttg 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33562024 aagagcttaaatatctactatctaaatatgcagttgcatcttacatggatggtcaatcaagtcgtgcctttg 33562095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 353
Target Start/End: Original strand, 17060424 - 17060473
Alignment:
Q  304 agagcttaaatatctactatctaaatatgcagttgcatcttacatggatg 353  Q
    ||||||||| |||||  ||||||||||||||| | |||||||||||||||    
T  17060424 agagcttaagtatcttttatctaaatatgcagatacatcttacatggatg 17060473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 374
Target Start/End: Original strand, 39162718 - 39163076
Alignment:
Q  19 tttagagaaaatgctatctagttttgtataacatggcagattggtcatataaaattgtcccatgaagagcttgtttagcaacgaccagcatccagcatta 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||  |||||||||||||||| |||||||| ||||||| | | |    
T  39162718 tttagagaaaatgctatctagttttgtataacatggcagattggtcatataatattttctgatgaagagcttgtttatcaacgaccggcatccaacttca 39162817  T
Q  119 gagcttgttccatgactttccctagattatctgtaaaactcaacaccagcatccaagatctagttcattccaatatttagtattaatgcagccttaactc 218  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  39162818 gagcttgttccatgactttccctagattatctgtaacactcagcaccaacattcaacatctagttcattccaatatttagtattaatgcagccttaactc 39162917  T
Q  219 atcaatgt----cattcttgcatactatannnnnnnnnnnnnnnaattcttactgtcactatcatttactgatgtttctataaatatgaagagcttaaat 314  Q
    ||||||||    ||||||| |||||||||               |||||||| ||||||||||||||||||||||||| |||||| |||| |||||||||    
T  39162918 atcaatgtcttacattcttacatactata-ttttttattttttaaattcttattgtcactatcatttactgatgtttccataaatttgaaaagcttaaat 39163016  T
Q  315 atctactatctaaatatgcagttgcatcttacatggatggtcaatcaagtcgtgcctttg 374  Q
    ||||||| || |||||||||||||||||||||||| ||| |||||| |||||||||||||    
T  39163017 atctactttcaaaatatgcagttgcatcttacatgcatgatcaatctagtcgtgcctttg 39163076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 374
Target Start/End: Complemental strand, 39206476 - 39206118
Alignment:
Q  19 tttagagaaaatgctatctagttttgtataacatggcagattggtcatataaaattgtcccatgaagagcttgtttagcaacgaccagcatccagcatta 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||  |||||||||||||||| |||||||| ||||||| | | |    
T  39206476 tttagagaaaatgctatctagttttgtataacatggcagattggtcatataatattttctgatgaagagcttgtttatcaacgaccggcatccaacttca 39206377  T
Q  119 gagcttgttccatgactttccctagattatctgtaaaactcaacaccagcatccaagatctagttcattccaatatttagtattaatgcagccttaactc 218  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  39206376 gagcttgttccatgactttccctagattatctgtaacactcagcaccaacattcaacatctagttcattccaatatttagtattaatgcagccttaactc 39206277  T
Q  219 atcaatgt----cattcttgcatactatannnnnnnnnnnnnnnaattcttactgtcactatcatttactgatgtttctataaatatgaagagcttaaat 314  Q
    ||||||||    ||||||| |||||||||               |||||||| ||||||||||||||||||||||||| |||||| |||| |||||||||    
T  39206276 atcaatgtcttacattcttacatactata-ttttttattttttaaattcttattgtcactatcatttactgatgtttccataaatttgaaaagcttaaat 39206178  T
Q  315 atctactatctaaatatgcagttgcatcttacatggatggtcaatcaagtcgtgcctttg 374  Q
    ||||||| || |||||||||||||||||||||||| ||| |||||| |||||||||||||    
T  39206177 atctactttcaaaatatgcagttgcatcttacatgcatgatcaatctagtcgtgcctttg 39206118  T

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Target: chr2; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 262 - 374
Target Start/End: Original strand, 39223408 - 39223520
Alignment:
Q  262 tcttactgtcactatcatttactgatgtttctataaatatgaagagcttaaatatctactatctaaatatgcagttgcatcttacatggatggtcaatca 361  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  39223408 tcttattgtcactatcatttactgatgtttctataaatatgaagagcttaaatatctactatctaaatatgcagttgcatcttacatgtatgatcaatca 39223507  T
Q  362 agtcgtgcctttg 374  Q
    |||| ||||||||    
T  39223508 agtcatgcctttg 39223520  T

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Target: chr2; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 259 - 374
Target Start/End: Complemental strand, 39197000 - 39196886
Alignment:
Q  259 aattcttactgtcactatcatttactgatgtttctataaatatgaagagcttaaatatctactatctaaatatgcagttgcatcttacatggatggtcaa 358  Q
    |||||||| ||| | ||||||||| ||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||| | ||||    
T  39197000 aattcttattgttattatcattta-tgatgcttctataaatatggagagcttaaatatctgctatctaaatatgcagttgaatcttacatggacgatcaa 39196902  T
Q  359 tcaagtcgtgcctttg 374  Q
    ||||| ||||||||||    
T  39196901 tcaagccgtgcctttg 39196886  T

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Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 39388309 - 39388229
Alignment:
Q  19 tttagagaaaatgctatctagttttgtataacatggcagattggtcatataaaattgtcccatgaagagcttgtttagcaa 99  Q
    ||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39388309 tttagagaaaatgttacgtagttttgtataacatggcagattggtcatataaaattgtccaatgaagagcttgtttagcaa 39388229  T

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Target: chr2; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 268 - 353
Target Start/End: Complemental strand, 39380959 - 39380873
Alignment:
Q  268 tgtcactatcatttactgatgtttctataaatatgaag-agcttaaatatctactatctaaatatgcagttgcatcttacatggatg 353  Q
    ||||||||||||||||||| | |||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  39380959 tgtcactatcatttactgacgcttctataaatatgagggagcttaaatatctgctatctaaatatgcagttgcatcttacatggatg 39380873  T

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Target: chr2; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 262 - 367
Target Start/End: Complemental strand, 39387985 - 39387877
Alignment:
Q  262 tcttactgtcactatcatttactgatgtttctataaatatgaagagctta---aatatctactatctaaatatgcagttgcatcttacatggatggtcaa 358  Q
    ||||| ||||||||||||||||||||| |||| |||||||||||||||||   | ||||| || |||||||||||||||| |||||||||||||| ||||    
T  39387985 tcttattgtcactatcatttactgatgcttctgtaaatatgaagagcttaattattatctgctttctaaatatgcagttgaatcttacatggatgatcaa 39387886  T
Q  359 tcaagtcgt 367  Q
    | |||||||    
T  39387885 ttaagtcgt 39387877  T

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Target: chr2; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 39197304 - 39197223
Alignment:
Q  19 tttagagaaaatgctatctagttttgtataacatggcagattggtcatataaaattgtcccatgaagagcttgtttagcaac 100  Q
    |||||| |||||||||| |||||||||||||||||| |||||||||||| ||||| |||| |||||||||||||||||||||    
T  39197304 tttagataaaatgctatatagttttgtataacatggaagattggtcatagaaaatggtccaatgaagagcttgtttagcaac 39197223  T

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Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 270 - 367
Target Start/End: Original strand, 39370818 - 39370916
Alignment:
Q  270 tcactatcatttactgatgtttctataaatatgaag-agcttaaatatctactatctaaatatgcagttgcatcttacatggatggtcaatcaagtcgt 367  Q
    ||||||||||||||  ||| |||||||||| ||| | ||||||| |||||| ||||||||||||||||||| ||||| ||||||| ||||| |||||||    
T  39370818 tcactatcatttaccaatgcttctataaatgtgaggcagcttaattatctattatctaaatatgcagttgcgtcttatatggatgatcaattaagtcgt 39370916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 39197093 - 39197037
Alignment:
Q  171 ccaagatctagttcattccaatatttagtattaatgcagccttaactcatcaatgtc 227  Q
    |||||||| | ||| ||||| ||||||||||||||||||||||||||||||||||||    
T  39197093 ccaagatccacttctttccagtatttagtattaatgcagccttaactcatcaatgtc 39197037  T

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Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 305 - 365
Target Start/End: Complemental strand, 39473191 - 39473131
Alignment:
Q  305 gagcttaaatatctactatctaaatatgcagttgcatcttacatggatggtcaatcaagtc 365  Q
    |||||||||||||| |||||||||||||||| | ||||||||||||||| ||||| |||||    
T  39473191 gagcttaaatatctgctatctaaatatgcagctacatcttacatggatgatcaattaagtc 39473131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 365
Target Start/End: Original strand, 39216356 - 39216454
Alignment:
Q  268 tgtcactatcatttactgatgtttctataaatatgaa-gagcttaaatatctactatctaaatatgcagttgcatcttacatggatggtcaatcaagtc 365  Q
    ||||| |||||||||| || | ||||||||||| ||  ||| |||||||||| |||||||||| ||||||||||||||  ||||||  ||||| |||||    
T  39216356 tgtcattatcatttaccgacgcttctataaataggagtgaggttaaatatctgctatctaaatttgcagttgcatctttaatggattatcaattaagtc 39216454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 304 - 353
Target Start/End: Original strand, 39152819 - 39152868
Alignment:
Q  304 agagcttaaatatctactatctaaatatgcagttgcatcttacatggatg 353  Q
    |||||||||||||||  ||||||||||||||| | |||||||||||||||    
T  39152819 agagcttaaatatctgatatctaaatatgcagctacatcttacatggatg 39152868  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 306 - 353
Target Start/End: Original strand, 44624577 - 44624624
Alignment:
Q  306 agcttaaatatctactatctaaatatgcagttgcatcttacatggatg 353  Q
    ||||||| ||||| |||||||||||||||| | |||||||||||||||    
T  44624577 agcttaactatctgctatctaaatatgcagatacatcttacatggatg 44624624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 359
Target Start/End: Complemental strand, 44895527 - 44895474
Alignment:
Q  306 agcttaaatatctactatctaaatatgcagttgcatcttacatggatggtcaat 359  Q
    ||||||||||| |  ||||||||||||||||| ||||| ||||||||| |||||    
T  44895527 agcttaaatatttgttatctaaatatgcagttacatctaacatggatgatcaat 44895474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 39388154 - 39388110
Alignment:
Q  129 catgactttccctagattatctgtaaaactcaacaccagcatcca 173  Q
    |||||||||| |||||||||||||||   ||||||||||||||||    
T  39388154 catgactttctctagattatctgtaacgttcaacaccagcatcca 39388110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 364
Target Start/End: Original strand, 45342744 - 45342814
Alignment:
Q  295 taaatatga-agagcttaaatatctactatctaaatatgcagttgcatcttacatggatggtcaatcaagt 364  Q
    ||||||||| ||||||||||||||| |||||||||||   |||  ||||||||||||||| ||||| ||||    
T  45342744 taaatatgagagagcttaaatatctgctatctaaatacttagtcacatcttacatggatgatcaattaagt 45342814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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