View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11723_low_14 (Length: 378)
Name: NF11723_low_14
Description: NF11723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11723_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 5887055 - 5886697
Alignment:
| Q |
1 |
ggtcgagtaatccaaatattcaagatattcaagaaaaacaggtattccttgaatgtggttgttatgaaggtcaatatataaaaggttggaagcaatattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5887055 |
ggtcgagtaatccaaatattcaagatattcaagaaaaacaggtattccttgaatgtggttgttatgaaggtcaatatataaaaggttggaagcaatattt |
5886956 |
T |
|
| Q |
101 |
tgcgaagagccttccatttctgtgagaaaattgtgtgaaatattaaggtattgaagaacttgtagtgtcaaaatccagttgggcagaattccttgaattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5886955 |
tgcgaagagccttccatttctgtgagaaaattgtgtgaaatattaaggtattgaagaacttgtagtgtcaaaatccagttgggcagaactccttgaattt |
5886856 |
T |
|
| Q |
201 |
ggttatttgacaggtctagattgattaatgttgattgatttctcaagaatctagggaaagttttcaagttgcaggatgccnnnnnnngacgttcaaaatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
5886855 |
ggttatttgacaggtctagattgattaatgttgattgatttctcaagaatctagggaaagttttcaagttgcaggatgccaaaaaaagacgttcaaaatt |
5886756 |
T |
|
| Q |
301 |
gggaaaggttgtctgatcagcatttgcatcattctcaataattgatatgttgttgtatg |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5886755 |
gggaaaggttgtctgatcagcatttgcatcattctcaatgattgatatgttgttgtatg |
5886697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 5 - 359
Target Start/End: Original strand, 5612957 - 5613314
Alignment:
| Q |
5 |
gagtaatccaaatattcaagatattcaagaaaaacaggtatt---ccttgaatgtggttgttatgaaggtcaatatataaaaggttggaagcaatatttt |
101 |
Q |
| |
|
||||||||||||||| || | ||||| ||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
5612957 |
gagtaatccaaatatctaatagattcagaaaaaacaggtattgttccttgaatttggttgttatgaaggtcaataagatgaaggttggaagtaatatttt |
5613056 |
T |
|
| Q |
102 |
gcgaagagccttccatttctgtgagaaaattgtgtgaaatattaaggtattgaagaacttgtagtgtcaaaatccagttgggcagaattccttgaatttg |
201 |
Q |
| |
|
|| || | ||||||| ||||||||||||||||||||||||||||| | || |||| ||||||| || ||||||| || |||| || |||||||||||| |
|
|
| T |
5613057 |
gcaaacaaccttccaactctgtgagaaaattgtgtgaaatattaagctgttcaagactttgtagtttccaaatccaatttggcacaactccttgaatttg |
5613156 |
T |
|
| Q |
202 |
gttatttgacaggtctagattgattaatgttgattgatttctcaagaatctagggaaagttttcaagttgcaggatgccnnnnnnngacgttcaaaattg |
301 |
Q |
| |
|
||| ||| ||||||||||| |||||||||||||||||||||||| |||| |||||||||| ||||||||||||| || |||||||||| |
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|
| T |
5613157 |
gttggctgaaaggtctagattttccaatgttgattgatttctcaagaatataggaaaagttttcaggttgcaggatgccaaatgaagatattcaaaattg |
5613256 |
T |
|
| Q |
302 |
ggaaaggttgtctgatcagcatttgcatcattctcaataattgatatgttgttgtatg |
359 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
5613257 |
ggaaaggcagtctgatcagcatttgcatcattctcatttattgatatgttgttgtatg |
5613314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 5 - 359
Target Start/End: Complemental strand, 5895896 - 5895542
Alignment:
| Q |
5 |
gagtaatccaaatattcaagatattcaagaaaaacaggtatt---ccttgaatgtggttgttatgaaggtc-aatatataaaaggttggaagcaatattt |
100 |
Q |
| |
|
|||||||||||||| | || | ||||| |||||||||||||| |||||||| ||||||||||||||||| |||| ||| |||||| || |||| |
|
|
| T |
5895896 |
gagtaatccaaatactgaataaattcaggaaaaacaggtattgttccttgaatttggttgttatgaaggtctaatacccaaa----tggaagtaagattt |
5895801 |
T |
|
| Q |
101 |
tgcgaagagccttccatttctgtgagaaaattgtgtgaaatattaaggtattgaagaacttgtagtgtcaaaatccagttgggcagaattccttgaattt |
200 |
Q |
| |
|
||| |||| ||||||| |||||||||||||||||||||||||||||| | ||||||| |||||| || ||||||| ||||||| ||||||||||| |
|
|
| T |
5895800 |
tgcaaagaaccttccaattctgtgagaaaattgtgtgaaatattaagttgttgaagactctgtagtttccaaatccaattgggcactgctccttgaattt |
5895701 |
T |
|
| Q |
201 |
ggttatttgacaggtctagattgattaatgttgattgatttctcaagaatctagggaaagttttcaagttgcaggatgccnnnnnnngacgttcaaaatt |
300 |
Q |
| |
|
|||||| ||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
5895700 |
ggttatgtgaaaggtctagagatagcaatgttgattgatttctcaagaatctagggaaagttttcaagttgcaggatgataaataaagaagttcaaaatt |
5895601 |
T |
|
| Q |
301 |
gggaaaggttgtctgatcagcatttgcatcattctcaataattgatatgttgttgtatg |
359 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
5895600 |
gggaaaggcagtctggtcagcatttgcatcattctcatttattgatatgttgttgtatg |
5895542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 56 - 359
Target Start/End: Complemental strand, 5848781 - 5848478
Alignment:
| Q |
56 |
tggttgttatgaaggtcaatatataaaaggttggaagcaatattttgcgaagagccttccatttctgtgagaaaattgtgtgaaatattaaggtattg-a |
154 |
Q |
| |
|
|||||||||||||||||||| | | ||||||||||| |||||||||| |||| ||||||| ||||||||||||||||| |||||||| || ||| || | |
|
|
| T |
5848781 |
tggttgttatgaaggtcaattaaaataaggttggaagtaatattttgcaaagaaccttccaattctgtgagaaaattgtatgaaatatcaa-gtagtgaa |
5848683 |
T |
|
| Q |
155 |
agaacttgtagtgtcaaaatccagttgggcagaattccttgaatttggttatttgacaggtctagattgattaatgttgattgatttctcaagaatctag |
254 |
Q |
| |
|
||| || |||| || ||||||| ||||| | | |||||||||||||||| ||| |||| ||||| ||||||||||||||| ||| |||||||| |
|
|
| T |
5848682 |
agactttttagtttccaaatccaattgggtaccactccttgaatttggttagctgaaaggtttagatatcccaatgttgattgatttttcaggaatctag |
5848583 |
T |
|
| Q |
255 |
ggaaagttttcaagttgcaggatgccnnnnnnngacgttcaaaattgggaaaggttgtctgatcagcatttgcatcattctcaataattgatatgttgtt |
354 |
Q |
| |
|
||||||||| |||||||||||||||| | || | |||||||||| |||||||||| || |||||||||||||||| |||||||||||||| |
|
|
| T |
5848582 |
ggaaagtttgcaagttgcaggatgccaaatatagtgtttgtagcttgggaaaggctgtctgatcaacacttgcatcattctcaatgattgatatgttgtt |
5848483 |
T |
|
| Q |
355 |
gtatg |
359 |
Q |
| |
|
||||| |
|
|
| T |
5848482 |
gtatg |
5848478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 87 - 359
Target Start/End: Original strand, 5604924 - 5605196
Alignment:
| Q |
87 |
tggaagcaatattttgcgaagagccttccatttctgtgagaaaattgtgtgaaatattaaggtattgaagaacttgtagtgtcaaaatccagttgggcag |
186 |
Q |
| |
|
|||||| || ||||||| |||| ||||||| |||||||||||||||||||||||||||||| |||||||| ||||||| || ||||||| || |||| |
|
|
| T |
5604924 |
tggaagtaagattttgcaaagaaccttccaattctgtgagaaaattgtgtgaaatattaagccattgaagactttgtagtttccaaatccaattcggcac |
5605023 |
T |
|
| Q |
187 |
aattccttgaatttggttatttgacaggtctagattgattaatgttgattgatttctcaagaatctagggaaagttttcaagttgcaggatgccnnnnnn |
286 |
Q |
| |
|
| ||||||||| | ||||| ||| ||||||||| || |||||||||||||| ||||||||||||||||| ||| | ||||||||||||| |
|
|
| T |
5605024 |
tactccttgaatgttgttatctgaaaggtctagagatatcaatgttgattgattcatcaagaatctagggaaactttgtatgttgcaggatgccaaatat |
5605123 |
T |
|
| Q |
287 |
ngacgttcaaaattgggaaaggttgtctgatcagcatttgcatcattctcaataattgatatgttgttgtatg |
359 |
Q |
| |
|
| ||| | ||||||||||| |||||||| |||||||||||||| || | ||||| ||||||||||||| |
|
|
| T |
5605124 |
aaaagttttatattgggaaaggaaatctgatcaacatttgcatcattcccattgattgacatgttgttgtatg |
5605196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 130 - 280
Target Start/End: Complemental strand, 5539986 - 5539836
Alignment:
| Q |
130 |
attgtgtgaaatattaaggtattgaagaacttgtagtgtcaaaatccagttgggcagaattccttgaatttggttatttgacaggtctagattgattaat |
229 |
Q |
| |
|
|||||| |||| |||||||| ||||||| |||||| || | ||||||||||||| |||| |||||||| |||||||| ||||||||| || | ||| |
|
|
| T |
5539986 |
attgtgagaaacattaaggttttgaagattttgtagcttccatatccagttgggcactgttccatgaatttgattatttgaaaggtctagaatgttcaat |
5539887 |
T |
|
| Q |
230 |
gttgattgatttctcaagaatctagggaaagttttcaagttgcaggatgcc |
280 |
Q |
| |
|
| |||| ||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
5539886 |
ctggatttgtttctcaagaaactagggaaagttttcaggttgcaggatgcc |
5539836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 280
Target Start/End: Original strand, 5857616 - 5857767
Alignment:
| Q |
129 |
aattgtgtgaaatattaaggtattgaagaacttgtagtgtcaaaatccagttgggcagaattccttgaatttggttatttgacaggtctagattgattaa |
228 |
Q |
| |
|
||||||| |||||||||||| ||||||| | ||||| || ||||||| || || | ||||| ||||| ||||||| ||| ||||||||| || | || |
|
|
| T |
5857616 |
aattgtgagaaatattaaggacttgaagatatggtagtttccaaatccaatttggtactattccatgaatctggttatctgaaaggtctagaatggtcaa |
5857715 |
T |
|
| Q |
229 |
tgttgattgatttctcaagaatctagggaaagttttcaagttgcaggatgcc |
280 |
Q |
| |
|
| | ||||| ||| ||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
5857716 |
tctggattggtttatcaagaaactagggatagttttcaagttgcaggatgcc |
5857767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 110 - 359
Target Start/End: Original strand, 5558473 - 5558719
Alignment:
| Q |
110 |
ccttccatttctgtgagaaaattgtgtgaaatattaaggtattgaagaacttgtagtgtcaaaatccagttgggcagaattccttgaatttggttatttg |
209 |
Q |
| |
|
||||||| ||| |||||||||||||| |||||||| || | || |||| ||| |||||| ||||||| ||||||| | ||| |||||||||||| || |
|
|
| T |
5558473 |
ccttccaattcagtgagaaaattgtgagaaatattcagctgttcaaga-ctt--agtgtccaaatccaattgggcactactccgtgaatttggttagctg |
5558569 |
T |
|
| Q |
210 |
acaggtctagattgattaatgttgattgatttctcaagaatctagggaaagttttcaagttgcaggatgccnnnnnnngacgttcaaaattgggaaaggt |
309 |
Q |
| |
|
| |||||||||| || ||| | ||||| || ||||||| |||||||||||||||||||||||| |||| ||||| ||| ||||||||| |
|
|
| T |
5558570 |
aaaggtctagatggaataacatggattggttcatcaagaaattagggaaagttttcaagttgcaggttgccaattctagacgtgtaaatttgggaaagaa |
5558669 |
T |
|
| Q |
310 |
tgtctgatcagcatttgcatcattctcaataattgatatgttgttgtatg |
359 |
Q |
| |
|
|| |||||| ||||||||||| | || | |||||||||||||| |||| |
|
|
| T |
5558670 |
agtatgatcaacatttgcatcacttacattgattgatatgttgttatatg |
5558719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 171 - 280
Target Start/End: Complemental strand, 5571808 - 5571699
Alignment:
| Q |
171 |
aaatccagttgggcagaattccttgaatttggttatttgacaggtctagattgattaatgttgattgatttctcaagaatctagggaaagttttcaagtt |
270 |
Q |
| |
|
||||||||||||| | ||||||||||| || |||| ||| ||||||||| || | ||| | |||| ||||||||||| |||||||||||||||| ||| |
|
|
| T |
5571808 |
aaatccagttgggaactattccttgaatctgattatgtgagaggtctagaatgctcaatctggatttgtttctcaagaaactagggaaagttttcaggtt |
5571709 |
T |
|
| Q |
271 |
gcaggatgcc |
280 |
Q |
| |
|
|||||||||| |
|
|
| T |
5571708 |
gcaggatgcc |
5571699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 188 - 274
Target Start/End: Original strand, 3748527 - 3748613
Alignment:
| Q |
188 |
attccttgaatttggttatttgacaggtctagattgattaatgttgattgatttctcaagaatctagggaaagttttcaagttgcag |
274 |
Q |
| |
|
||||||||||| ||||||| ||| |||||||| | ||| ||||||| || ||| ||||||| ||||| |||||||||||||||||| |
|
|
| T |
3748527 |
attccttgaatctggttatctgaaaggtctagttggatcaatgttgtatggtttatcaagaaactaggaaaagttttcaagttgcag |
3748613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 130 - 280
Target Start/End: Complemental strand, 5584056 - 5583906
Alignment:
| Q |
130 |
attgtgtgaaatattaaggtattgaagaacttgtagtgtcaaaatccagttgggcagaattccttgaatttggttatttgacaggtctagattgattaat |
229 |
Q |
| |
|
|||||| |||||||||||| ||||||| ||| | || ||||||||||||| | ||||||||||| || |||| ||| ||||||||| || | || |
|
|
| T |
5584056 |
attgtgagaaatattaaggctttgaagattttgaatcctccaaatccagttgggaactattccttgaatctgattatgtgagaggtctagaatgctaaaa |
5583957 |
T |
|
| Q |
230 |
gttgattgatttctcaagaatctagggaaagttttcaagttgcaggatgcc |
280 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
5583956 |
caggattagtttctcaagaaactagggaaagttttcaggttgcaggatgcc |
5583906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 220
Target Start/End: Original strand, 1482686 - 1482796
Alignment:
| Q |
110 |
ccttccatttctgtgagaaaattgtgtgaaatattaaggtattgaagaacttgtagtgtcaaaatccagttgggcagaattccttgaatttggttatttg |
209 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| | |||| | || |||| || ||||||| || || || ||||||||||||||| | || |
|
|
| T |
1482686 |
ccttccaattctgtgagaaaattgtgtgaaatattaagttcctgaatactttctagtttccaaatccaattaggaagtgctccttgaatttggttctctg |
1482785 |
T |
|
| Q |
210 |
acaggtctaga |
220 |
Q |
| |
|
| ||||||||| |
|
|
| T |
1482786 |
aaaggtctaga |
1482796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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