View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11723_low_15 (Length: 371)
Name: NF11723_low_15
Description: NF11723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11723_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 193 - 353
Target Start/End: Complemental strand, 30683833 - 30683673
Alignment:
| Q |
193 |
gattaattttctagtttaaatattctttgtatttagttagttacagcagtgaagtttaactctctctagctagtgtaggttaaacacatagtatatataa |
292 |
Q |
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| T |
30683833 |
gattaattttctagtttaaatattctttgcatttagttagttacagtagtgaagtttaactctctccagctagtgtaggttaaacacacagtatatataa |
30683734 |
T |
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| Q |
293 |
actgatgctacaaaatacataattcaaataccaattacaatattctaacatataccaattt |
353 |
Q |
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| T |
30683733 |
actgatgctacaaaacacataattcaaataccaattacaatattctaacatataccaattt |
30683673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 27 - 155
Target Start/End: Complemental strand, 30683999 - 30683871
Alignment:
| Q |
27 |
ggatccaattgtagcttctcctttatatgaaatcataggcgcaagatctacaacttctccaatagattgtaatattatctgccgacatgataaataacca |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30683999 |
ggatccaattgtagcttctcctttatatgaaatcataggcgcaagatctacaacttctccaatagattgtaatattatctgccgacatgataaataacca |
30683900 |
T |
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| Q |
127 |
acagaacatcaatcccagatttcctcaag |
155 |
Q |
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| T |
30683899 |
acagaacatcaatcccagatttcctcaag |
30683871 |
T |
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