View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11723_low_16 (Length: 351)
Name: NF11723_low_16
Description: NF11723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11723_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 333
Target Start/End: Complemental strand, 18140753 - 18140439
Alignment:
| Q |
18 |
atggatttgcccactcttcgcgtgtttcaataaaaccacacttcagtgtcttagatgctaccatttttccagcatttggtaggtgatcctttgctgcatt |
117 |
Q |
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| T |
18140753 |
atggatttgcccactcttcgcgtgtttcaataaaaccacacttcattgtcttagaggctaccatttttccagcatttggtaggtgatcctttgctgcatt |
18140654 |
T |
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| Q |
118 |
gaattaggcaaatcttagcattcaatggttatgataaaagaattagaaaaaagtaacatattaaaccaattagatatgataatcaaatgacaaattgttt |
217 |
Q |
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| T |
18140653 |
gaattaggcaaatcttagcattcaatggttatgataaaagaattagaaaaaagtaacatattaaaccaattagatatgataatcaaatgacaaattgttt |
18140554 |
T |
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| Q |
218 |
gggagaatttgaacttgattcttaaatgaaacaattttttgtgaccctatatt-ttttctcactcacttcacctgagaccgattttctgcttaggtttta |
316 |
Q |
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| T |
18140553 |
gggagaatttgaacttgattcttaaatgaaacaattttttgtgaccctatatttttttctcactcacttcacc-gagaccgattttctgcttagg-tttc |
18140456 |
T |
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| Q |
317 |
ttcttcttcttcgtgat |
333 |
Q |
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| T |
18140455 |
ttcttcttcttcgtgat |
18140439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 229
Target Start/End: Original strand, 18105336 - 18105414
Alignment:
| Q |
151 |
ataaaagaattagaaaa-aagtaacatattaaaccaattagatatgataatcaaatgacaaattgtttgggagaatttga |
229 |
Q |
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|||||| |||||||||| ||||||||||||||||||||||||| ||| | |||||| ||| ||||||| ||||||||| |
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| T |
18105336 |
ataaaaaaattagaaaaaaagtaacatattaaaccaattagat-ggatccttaaatgataaactgtttggaagaatttga |
18105414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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