View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11723_low_17 (Length: 342)
Name: NF11723_low_17
Description: NF11723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11723_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 7969396 - 7969180
Alignment:
| Q |
19 |
aaccctccacctcgtcagccgcctcatcggagactagatgaccactgcaccatcatcaccgattactaaatccaagagcaggcaatcatccacctcatca |
118 |
Q |
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| T |
7969396 |
aaccctccacctcgtcagccgcctcatcggagactagatgaccactgcgccatcatcaccaattactaaatccaaaagcaggcaatcatccacctcatca |
7969297 |
T |
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| Q |
119 |
tctgccgctgtcggcaacccttgtcatgaagacaatctccctataagtagagaaataatacattattgttttttctgttttgtcttgagctgtataagat |
218 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7969296 |
tctgccactgtcggcaacccttgtcatgaagacaatctccctataagtagagaaataatacattactgttttttctgttttgtcttgagctgtataagat |
7969197 |
T |
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| Q |
219 |
ttatgttctattaagga |
235 |
Q |
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||||||||||||||||| |
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| T |
7969196 |
ttatgttctattaagga |
7969180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 186
Target Start/End: Original strand, 37577764 - 37577873
Alignment:
| Q |
77 |
ccgattactaaatccaagagcaggcaatcatccacctcatcatctgccgctgtcggcaacccttgtcatgaagacaatctccctataagtagagaaataa |
176 |
Q |
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| T |
37577764 |
ccgattaatacatccaagagcatgcaaccgtccacctcattgtctgccgccgttggtgacccttgtcatgaagacaatcaccatataagttgagaagtca |
37577863 |
T |
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| Q |
177 |
tacattattg |
186 |
Q |
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|||||||||| |
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| T |
37577864 |
tacattattg |
37577873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 32895222 - 32895287
Alignment:
| Q |
50 |
gactagatgaccactgcaccatcatcaccgattactaaatccaagagcaggcaatcatccacctcatcat |
119 |
Q |
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| T |
32895222 |
gactagatgaccactgcg---tcatcacc-attactacatccaagagcaggcaaccatccaccttatcat |
32895287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 42 - 171
Target Start/End: Complemental strand, 32651301 - 32651175
Alignment:
| Q |
42 |
tcatcggagactagatgaccactgcaccatcatcaccgattactaaatccaagagcaggcaatcatccacctcatcatctgccgctgtcggcaacccttg |
141 |
Q |
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| T |
32651301 |
tcatcggggactagatgaccactgcaccatcg---ccgattactatatccaagagaagtcaaccgtccacctcatcatctgctgccatcggcaaccgtta |
32651205 |
T |
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| Q |
142 |
tcatgaagacaatctccctataagtagaga |
171 |
Q |
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| T |
32651204 |
tcacgaagacagtcaccctataagtagaga |
32651175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 186
Target Start/End: Original strand, 25470010 - 25470117
Alignment:
| Q |
79 |
gattactaaatccaagagcaggcaatcatccacctcatcatctgccgctgtcggcaacccttgtcatgaagacaatctccctataagtagagaaataata |
178 |
Q |
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|||||||| |||||||||||||||| |||| ||||||||||| || || ||||| ||| | |||||||||||||| ||||||||||||| || ||||| |
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| T |
25470010 |
gattactacatccaagagcaggcaaccatcaacctcatcatccgctgccatcggcgacctgtatcatgaagacaatcaccctataagtagaaaattaata |
25470109 |
T |
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| Q |
179 |
cattattg |
186 |
Q |
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||||||| |
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| T |
25470110 |
tattattg |
25470117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 186
Target Start/End: Original strand, 32768567 - 32768662
Alignment:
| Q |
91 |
caagagcaggcaatcatccacctcatcatctgccgctgtcggcaacccttgtcatgaagacaatctccctataagtagagaaataatacattattg |
186 |
Q |
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| T |
32768567 |
caagagcaggcagccgtccacctcatcgtttgccgccgtcggggacccttatcatgaagacaaacaccctataagtagtaaagtaatacattattg |
32768662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 32740597 - 32740694
Alignment:
| Q |
19 |
aaccctccacctcgtcagccgcctcatcggagactagatgaccactgcaccatcatcaccgattactaaatccaagagcaggcaatcatccacctcatca |
118 |
Q |
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| T |
32740597 |
aaccctccacctcgtcctccgcctccttggagactagatgacca---caacaccatcaccgattactacatccaagagttggcaattgtccaccttatca |
32740693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 107 - 185
Target Start/End: Original strand, 28475450 - 28475529
Alignment:
| Q |
107 |
tccacctcatcatctgccgctgtcggcaacccttgtcatgaagacaat-ctccctataagtagagaaataatacattatt |
185 |
Q |
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| T |
28475450 |
tccacctcatcgtccaccgctgtcggcaacccttatcgtgaagacaatccaccctatatgtagagaagtcatgcattatt |
28475529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 186
Target Start/End: Complemental strand, 2166159 - 2166106
Alignment:
| Q |
135 |
acccttgtcatgaagacaatctccctataagtagagaaata--atacattattg |
186 |
Q |
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|||||||||||||||||||||||| ||||| |||||| ||| ||||||||||| |
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| T |
2166159 |
acccttgtcatgaagacaatctccttataactagagagatatcatacattattg |
2166106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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