View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11723_low_19 (Length: 307)
Name: NF11723_low_19
Description: NF11723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11723_low_19 |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 9 - 291
Target Start/End: Original strand, 8972187 - 8972469
Alignment:
| Q |
9 |
acgttggatacgcaatgcagcccttactaaagaatatttagcaatatcaatccttgcattgaggagagaatttgagccttcgttgtgaaaaggatactgc |
108 |
Q |
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| T |
8972187 |
acgttggatacgcaatgcagcccttactaaagaatatttagcaatatcaatccttgcattgaggagagaatttgagccttcgttgtgaaaaggatactgc |
8972286 |
T |
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| Q |
109 |
cgatcatcctcagcctcgtcatttggagtagaagttgcggcgtcttcatcctcaagagctttcattagcttttccagctgatcatcagcatccagctttg |
208 |
Q |
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| T |
8972287 |
cgatcatcctcagcctcgtcatttggagtagaagttgcggcctcttcatcctcaagagctttcattagcttttccagctgatcatcagcatccagctttg |
8972386 |
T |
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| Q |
209 |
ccataatcatccgcaacctgtctcgtctctccatctccctctccctaaagagggtaattggctcacccagatagcgaagatgg |
291 |
Q |
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| T |
8972387 |
ccataatcatccgcaacctgtctcgtctctccatctccctctccctaaagagggtaattggctcacccagatagcgaagatgg |
8972469 |
T |
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Target: scaffold0012 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 9 - 288
Target Start/End: Original strand, 45976 - 46255
Alignment:
| Q |
9 |
acgttggatacgcaatgcagcccttactaaagaatatttagcaatatcaatccttgcattgaggagagaatttgagccttcgttgtgaaaaggatactgc |
108 |
Q |
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|||||| ||||||||||| ||| |||||||||||||||| ||||||||||||||||||| |||||||| ||||| ||||| ||| ||||||||||| |
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| T |
45976 |
acgttgaatacgcaatgcggcctttactaaagaatatttcgcaatatcaatccttgcatcaaggagagactttgacccttcagtgtaaaaaggatactaa |
46075 |
T |
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| Q |
109 |
cgatcatcctcagcctcgtcatttggagtagaagttgcggcgtcttcatcctcaagagctttcattagcttttccagctgatcatcagcatccagctttg |
208 |
Q |
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| T |
46076 |
agatcatcctcagcctcatcttttggagcagaagttgcagcctcttcatcctcaagagctttcattagcttttccagctgaccatcagcatccagctttg |
46175 |
T |
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| Q |
209 |
ccataatcatccgcaacctgtctcgtctctccatctccctctccctaaagagggtaattggctcacccagatagcgaaga |
288 |
Q |
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| T |
46176 |
ccataatcatccgcaacctatctcgtctctccatctccctctcaccaaagagagtaatcggctcaccaagatggcgaaga |
46255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 9 - 288
Target Start/End: Complemental strand, 14590480 - 14590201
Alignment:
| Q |
9 |
acgttggatacgcaatgcagcccttactaaagaatatttagcaatatcaatccttgcattgaggagagaatttgagccttcgttgtgaaaaggatactgc |
108 |
Q |
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|||||| || |||||||| ||| |||||||||||||||| ||||||||||||||||||| |||||||| ||||| ||||| ||| ||||||||||| |
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| T |
14590480 |
acgttgaattcgcaatgcggcctttactaaagaatatttcgcaatatcaatccttgcatcaaggagagactttgacccttcagtgtaaaaaggatacttt |
14590381 |
T |
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| Q |
109 |
cgatcatcctcagcctcgtcatttggagtagaagttgcggcgtcttcatcctcaagagctttcattagcttttccagctgatcatcagcatccagctttg |
208 |
Q |
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|||||||||| ||||| || ||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
14590380 |
agatcatcctctgcctcatcttttggagcagaagttgctgcctcttcatcctcaagagctttcattagcttttccagctgaccatctgcatccagctttg |
14590281 |
T |
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| Q |
209 |
ccataatcatccgcaacctgtctcgtctctccatctccctctccctaaagagggtaattggctcacccagatagcgaaga |
288 |
Q |
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| T |
14590280 |
ccataatcatccgcaacctatctcgtctctccatctccctctcaccaaagagagtaatcggctcaccaagatggcgaaga |
14590201 |
T |
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