View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11723_low_20 (Length: 292)
Name: NF11723_low_20
Description: NF11723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11723_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 17 - 282
Target Start/End: Complemental strand, 41297357 - 41297101
Alignment:
| Q |
17 |
agatgaatcatgatgaaccatgttgtttagattctgatcactacttgttgtatcagaaacagtgaaatcttgatgatgatgatagaaattatcattcatg |
116 |
Q |
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| T |
41297357 |
agatgaatcatgatgaaccatgttgtttagattctgatcactacttgttgtatcagaaacagtgaaatcttgatgatgat---agaaattatcattcatg |
41297261 |
T |
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| Q |
117 |
gtttttgaagaagaggaaggaccaacatgttgttgacttagttttcctgagaaatttgttttccacatgacagagtttgttgtgtcagtactatgttgtt |
216 |
Q |
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| T |
41297260 |
gtttttgaagaagaggaaggaccaacatgttgttgacttagttttcctgagaaatttgttttccacatgacagagtttgttgtgtcagtactatgtt--- |
41297164 |
T |
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| Q |
217 |
gttgttgaagatgcggtttggaaaaacctatcatctccatccctgttgtgagattgaacatctctg |
282 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41297163 |
---gttgaagatgttgtttggaaaaacctatcatctccatccctgttgtgagattgaacatctctg |
41297101 |
T |
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