View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11723_low_23 (Length: 271)
Name: NF11723_low_23
Description: NF11723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11723_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 9330278 - 9330023
Alignment:
| Q |
1 |
attgggctatttcatttgaaagaagaaaataacgaaaataccagcttccatacaaaaatgtctaatacctatagtaattttaattgatacatttgattag |
100 |
Q |
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| T |
9330278 |
attgggctatttcatttgaaagaagaaaataacgaaaataccagcttccatacataaatgtctaatacctatagtaattttaattgatacatttgattag |
9330179 |
T |
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| Q |
101 |
tttattactcttcagttttgaacttttgatcatgtatgttgcatactagattcttggtagtttggtcacctaccatgctcatatataaaagtatgaccag |
200 |
Q |
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| T |
9330178 |
tttattactcttcagttttgaacttttgatcatgtatgttgcatactagattcttggtagtttggtcacctaccatgctcatatataaaagtatgaccag |
9330079 |
T |
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| Q |
201 |
aatattagctagcttttacattttgatggttttgctgattgaatttcctttacttt |
256 |
Q |
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| T |
9330078 |
aatattagctagcttttacattttgatggttttgctgattgaatttcctttacttt |
9330023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 109
Target Start/End: Complemental strand, 9357933 - 9357837
Alignment:
| Q |
11 |
ttcatttgaaagaagaaaataacgaaaataccagcttccatacaaaaatgtctaatacctatagtaattttaattgatacatttgattagtttattact |
109 |
Q |
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| T |
9357933 |
ttcatttcaaagaagaaataaa--aaaagactagcttccatacaaaaatgtctgatacctttagtaattttaattgatacatctgattagtttattact |
9357837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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