View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11723_low_24 (Length: 267)
Name: NF11723_low_24
Description: NF11723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11723_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 6134049 - 6133800
Alignment:
| Q |
1 |
tagattcaaaatttgatagcataaactttaaaggcttggaaaatctatatttatctaaataaaccctatgtacacttgacccaacatcatcatacaatga |
100 |
Q |
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| T |
6134049 |
tagattcaaaatttgatagcataaactttaaaggcttggaaaatctatatttatctaaataaaccctatgtacatttgacccaacatcatcatacaatga |
6133950 |
T |
|
| Q |
101 |
accataaacattcacaaaatgccctaatgtctgaattttcaaattcaatgaatgaggtgaaccattagtaagaatctcaggaagagtatacctcaaacat |
200 |
Q |
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| T |
6133949 |
accataaacgttcacaaaatgccctaatgtctgaattttcaaattcaatgaatgaggtgaaccattagtaagaatctcaggaagagtatacctcaaacat |
6133850 |
T |
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| Q |
201 |
atcactgaagaagaagacatgtcatcaataagatgagaggaactaatctt |
250 |
Q |
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| T |
6133849 |
atcattgaagaagaagacatgtcatctataagatgagaggaactaatctt |
6133800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 20600212 - 20599991
Alignment:
| Q |
18 |
agcataaactttaaaggcttggaaaatctatatttatctaaataaaccctatgtacacttgacccaacatcatcatacaatgaaccataaacattcacaa |
117 |
Q |
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| T |
20600212 |
agcagaaactctaaaggcttggcaaatctacatttatctaaataaaccatatgtacacttgacccaacatcatcatacaatgaaccataaacattcacaa |
20600113 |
T |
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| Q |
118 |
aatgccctaatgtctgaattttcaaattcaatgaatgaggtgaaccattagtaagaatctcaggaagagtatacctcaaacatatcactgaagaagaaga |
217 |
Q |
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| T |
20600112 |
aatgccctaatgtctgaattttcaaattcaaagaatgagatgaaccattagtaagaatctcaggaagagtatacctcaaggatatcattgaagaagaaga |
20600013 |
T |
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| Q |
218 |
catgtcatcaataagatgagag |
239 |
Q |
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| T |
20600012 |
catgtcatcaataagatgagag |
20599991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 29 - 214
Target Start/End: Original strand, 47944677 - 47944862
Alignment:
| Q |
29 |
taaaggcttggaaaatctatatttatctaaataaaccctatgtacacttgacccaacatcatcatacaatgaaccataaacattcacaaaatgccctaat |
128 |
Q |
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||||||||| | ||||||| |||||||||||||||||||||| || ||||||||| |||||||| ||||||||||||| ||||||||||||| |||||| |
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| T |
47944677 |
taaaggcttagcaaatctagatttatctaaataaaccctatgcacccttgacccagcatcatcacacaatgaaccatagacattcacaaaattccctaaa |
47944776 |
T |
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| Q |
129 |
gtctgaattttcaaattcaatgaatgaggtgaaccattagtaagaatctcaggaagagtatacctcaaacatatcactgaagaaga |
214 |
Q |
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|||||||||||||| ||| | ||||| ||||||||| |||||||||||||||||||||||||||||| |||||| ||| ||||| |
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| T |
47944777 |
gtctgaattttcaatatcacagcatgagatgaaccattggtaagaatctcaggaagagtatacctcaaagatatcattgatgaaga |
47944862 |
T |
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