View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11723_low_26 (Length: 254)
Name: NF11723_low_26
Description: NF11723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11723_low_26 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 6134543 - 6134304
Alignment:
| Q |
15 |
caaaggttaacaaggattctttcccaacacttggaatcatcgaattattcattcaaatcctccaagatgacactaaccaccacctcttctcctttgaaag |
114 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6134543 |
caaaggttaacaaggattcattcccaacacttggaatcatcggattattcattcaaatcctccaagatgacactaaccaccacctcttctcctttgaaag |
6134444 |
T |
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| Q |
115 |
tatctcaaaatacgagtccgaggaattcgaaaagaaaacgattgatctgaattcttctttgttgcgcggtaacgagcatacaagcttttataaaacctca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6134443 |
tatctcaaaatacgagtccgaggaattcgaaaagaaaacgattgatctgaattcttctttgttgcgcggtaacgagcatacaagctcttataaaacctca |
6134344 |
T |
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| Q |
215 |
taccattcacactttgtccaaactcctcctcaaacttctt |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
6134343 |
taccattcacactttgtccaaactcctcctcaaacttctt |
6134304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 251
Target Start/End: Complemental strand, 20600726 - 20600490
Alignment:
| Q |
15 |
caaaggttaacaaggattctttcccaacacttggaatcatcgaattattcattcaaatcctccaagatgacactaaccaccacctcttctcctttgaaag |
114 |
Q |
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||||||||||||||||||| |||| |||||||||||||| || ||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20600726 |
caaaggttaacaaggattcattcctaacacttggaatcaccggattattcttttaaatcctccaagatgacactaaccaccacctcttctcctttgaaag |
20600627 |
T |
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| Q |
115 |
tatctcaaaatacgagtccgaggaattcgaaaagaaaacgattgatctgaattcttctttgttgcgcggtaacgagcatacaagcttttataaaacctca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||| ||||||||||||| ||||||||||||| |
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| T |
20600626 |
tatctcaaaatacgagtccgaggaattcgaaaagaaaacgattgctctgaattcttctttgtttcccggtattgagcatacaagctcttataaaacctca |
20600527 |
T |
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| Q |
215 |
taccattcacactttgtccaaactcctcctcaaactt |
251 |
Q |
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| T |
20600526 |
taccattcacactttgtccaaactcctcctcaaactt |
20600490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 254
Target Start/End: Original strand, 47944312 - 47944400
Alignment:
| Q |
166 |
ttcttctttgttgcgcggtaacgagcatacaagcttttataaaacctcataccattcacactttgtccaaactcctcctcaaacttctt |
254 |
Q |
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|||||||||||||| || || ||||| ||||| | ||| ||||| ||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
47944312 |
ttcttctttgttgcccgatactgagcaaacaagttcttaaaaaacttcataccattcaccctttgtccaaactcctcctcgaacttctt |
47944400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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