View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11723_low_27 (Length: 249)
Name: NF11723_low_27
Description: NF11723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11723_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 32119184 - 32118953
Alignment:
| Q |
5 |
tgtctccatttagatatgttgtctttgatcagatttgtcttttctttgatattcttgatatcagaatccacctggaatcataaatccagacacgtaattc |
104 |
Q |
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| T |
32119184 |
tgtctccgtatagatatgttgtctttgatcagatttgtcttttctttgatattcttgatatcagaatccacctggaatcataaatccagacacgtaattc |
32119085 |
T |
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| Q |
105 |
aagtccggtatcatatatcaatcaaaatttactccgcttgtgtatcgagaagttaggcataattgtctctccttagtgtcatttttctgatttttgaggc |
204 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32119084 |
aagtccggtatcatatatcaatcaaaatttactctgcttgtgtattgagaagttaggcataattgtctctccttagtgtcatttttctgatttttgaggc |
32118985 |
T |
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| Q |
205 |
atcgctggtctagctttaatgatattgactct |
236 |
Q |
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| T |
32118984 |
atcgctggtctagctttaatgatattgactct |
32118953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 14238523 - 14238318
Alignment:
| Q |
14 |
ttagatatgttgtctttgatcagatttgtcttttctttgatattcttgatatcagaatccacctggaatcataaatccagacacgtaattcaagtccggt |
113 |
Q |
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| T |
14238523 |
ttagatatgttgtcttccatcatatttgccttttccttggcattcttgatatc-gattccacctggaatcatgaatccaggtacataattcatgtccggt |
14238425 |
T |
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| Q |
114 |
atcatatatcaatcaaaatttactccgcttgtgtatcgagaagttaggcataattgtctctccttagtgtcatttttctga-tttttgaggcatcgctgg |
212 |
Q |
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| T |
14238424 |
atcgtatatcaataaatatttactctgcttgtgtaatcagaagttgagcataattttttctcttttgtttcattttgctgattttttaaggcattgctgg |
14238325 |
T |
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| Q |
213 |
tctagct |
219 |
Q |
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| T |
14238324 |
tctagct |
14238318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 14375614 - 14375709
Alignment:
| Q |
13 |
tttagatatgttgtctttgatcagatttgtcttttctttgatattcttgatatcagaatccacctggaatcataaatccagacacgtaattcaagtc |
109 |
Q |
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| T |
14375614 |
tttagatatgttgtctttgatcacatttgccttttctttgatattcttgatatc-gattccacctggaatcataaatccaggtacgtaattcaagtc |
14375709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 41436394 - 41436316
Alignment:
| Q |
14 |
ttagatatgttgtctttgatcagatttgtcttttctttgatattcttgatatcagaatccacctggaatcataaatccag |
93 |
Q |
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| T |
41436394 |
ttagatatgttgtcttccatcacatttgccttttccttgatattcttgatatc-gattccacctggaatcataaatccag |
41436316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 41449607 - 41449529
Alignment:
| Q |
14 |
ttagatatgttgtctttgatcagatttgtcttttctttgatattcttgatatcagaatccacctggaatcataaatccag |
93 |
Q |
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|||||||||||||||| |||| |||| |||||| ||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
41449607 |
ttagatatgttgtcttccatcacgtttgccttttccttgatattcttgatatc-gattccacctggaatcataaatccag |
41449529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 14376889 - 14376954
Alignment:
| Q |
155 |
agttaggcataattgtctctccttagtgtcatttttctgatttttg-aggcatcgctggtctagct |
219 |
Q |
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| T |
14376889 |
agttgggcataattatttctcctttgtgtcatttttctgatttttgaaggcattgctggtctagct |
14376954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 10593450 - 10593522
Alignment:
| Q |
13 |
tttagatatgttgtctttgatcagatttgtcttttctttgatattcttgatatcagaatccacctggaatcata |
86 |
Q |
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|||||| |||| ||||||||||| |||| |||| ||||||||||||||||||| || |||||||||||||||| |
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| T |
10593450 |
tttagacatgtcgtctttgatcacattttcctttactttgatattcttgatatc-gattccacctggaatcata |
10593522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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