View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11723_low_6 (Length: 606)
Name: NF11723_low_6
Description: NF11723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11723_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 4e-98; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 238 - 453
Target Start/End: Complemental strand, 6097967 - 6097751
Alignment:
| Q |
238 |
tgtttttattgatatttaattgctattttgtatgtttgtttgataaatataggctctaagatcaacacttgatggtggaaaagccttggaa---taccag |
334 |
Q |
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| T |
6097967 |
tgtttttattgatatttaattgctattttgtatgtttgtttgataaatataggctctaagatcaacatttgatggtggaaaagccttggaatagtaccag |
6097868 |
T |
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| Q |
335 |
attgtgttcttatcaatgggaagggaccttatcagtacaataatactcttgtcccaaataatgaaaagctataaaacactgacgcaataccaatgcctac |
434 |
Q |
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| T |
6097867 |
attgtgttcttatcaatgggaa--gaccttatcagtacaataatactcttgtcccaaataatgaaaagctatgaaacactgacgcaataccaatgcctac |
6097770 |
T |
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| Q |
435 |
acacagtgtacaccacacc |
453 |
Q |
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| T |
6097769 |
acacaatgtacaccacacc |
6097751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 126 - 386
Target Start/End: Original strand, 1592709 - 1592979
Alignment:
| Q |
126 |
ttcctttcgcgcagcccgacggcaaaattttcattatgattgg--att-----aatcaggactacacgtttagttattgcctttcatttaactttcttct |
218 |
Q |
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| T |
1592709 |
ttcctttcgcgcagcccgacggtgaaattttcattatgattggtgattggtatactcaggactacacggttagttatcacctttcattagactttcttct |
1592808 |
T |
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| Q |
219 |
ataaattttgaaaatgttgtg--tttttattgatatttaattgctattttgtatgtttgtttgataaatataggctctaagatcaacacttgatggtgga |
316 |
Q |
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| T |
1592809 |
gtaaattctgaagatgttgtgagtttttattgatatttgattgctattttgtatgtttttttgataaatataggctctaagatcaacacttgacggtgga |
1592908 |
T |
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| Q |
317 |
aaag-ccttggaataccagattgtgttcttatcaatgggaagggaccttatcagtacaataatactcttgt |
386 |
Q |
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| T |
1592909 |
aaagaccttggaataccagatggtgttcttatcaatgggaagggaccttatcagtacaataatactcttgt |
1592979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 419 - 586
Target Start/End: Original strand, 1593132 - 1593298
Alignment:
| Q |
419 |
caataccaatgcctacacacagtgtacaccacacccactttcaatttttacactggtctattggtttgagttttgactggnnnnnnnactcaatctctgc |
518 |
Q |
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| T |
1593132 |
caataccaatgcctacacacaatgtaaaccacacccactttcaatttttccactggtttattggtttgacttgtgactggttctttca-tcactctctgc |
1593230 |
T |
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| Q |
519 |
aaagtaatttgttttgattatcttaaagaactatatctttattctttagctcttcttattcatgattt |
586 |
Q |
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| T |
1593231 |
aaagtaatttgttttgattatctcaaagaactatatctttattcttcacctcttctcattcatgattt |
1593298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 522 - 593
Target Start/End: Complemental strand, 6097570 - 6097499
Alignment:
| Q |
522 |
gtaatttgttttgattatcttaaagaactatatctttattctttagctcttcttattcatgatttattattg |
593 |
Q |
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| T |
6097570 |
gtaatttgttttgattatcttaaagaactatatctttattctttagctcttcttattcatgatttattattg |
6097499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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