View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11723_low_8 (Length: 541)
Name: NF11723_low_8
Description: NF11723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11723_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 424; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 16 - 529
Target Start/End: Complemental strand, 41804389 - 41803878
Alignment:
| Q |
16 |
tcaacatttctatcatgtaactctaacttctgctgtgtcaaatcactgatctcttcaatgttgacccttgcttgctctttatattgtgcgtaaagaaatt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
41804389 |
tcaacatttctatcatgtaactctaacttctgctgtgttaaagcactgatctcttcaatgttgacccttgcttgctcttcatattgtgcgtaaagaaatt |
41804290 |
T |
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| Q |
116 |
ggtattgaatgtagaaatccttaataaattcagcaagtggttccctcttcaaaacttctgccggggtgccatcctcgttaaggtcgtgatcattaacaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
41804289 |
ggtattgaatgtagaaatccttaataaattcagcaagtggttccctcttcaaaacttctgtcggggtgccatcctcgttaaggtcgtgatcattaataag |
41804190 |
T |
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| Q |
216 |
taagtttgattatcctttttactttgtcttcaatttctgtagnnnnnnnnnnnnngtccaaatcatttgttcgagctatcataaggtgatatacaaaaat |
315 |
Q |
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| T |
41804189 |
taagtttgattatcctttttact--gtcttcaatttctgtagaaaaagtaaaaaagtccaaatcatttgttcgagctaccataaggtgatatacaaaaat |
41804092 |
T |
|
| Q |
316 |
catagcatattttgcatcacgagcttccatcatatgacaattcagaagtcatggtgcatagagattgtacctgctttagctccctggagctgcttttctt |
415 |
Q |
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| T |
41804091 |
catagcatattttgcatcgcgagcttccatcatatcacaattcagaagtcatggtacatagagattgtacctgctttagctccctggagctgcttttctt |
41803992 |
T |
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| Q |
416 |
tatcatacttttcagtatcttcgagcttcttcatgataagattgataacagatagttccttttctctttctttggactccatttcaagttctgaaacttg |
515 |
Q |
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| T |
41803991 |
tatcatacttttcagtatcttcgagcttcttcatgataagattgataacagatagttccttttctctttctttggactccatttcaagttctgaaacttg |
41803892 |
T |
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| Q |
516 |
gttccgcggcccta |
529 |
Q |
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| T |
41803891 |
gttccgcggcccta |
41803878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 99 - 257
Target Start/End: Complemental strand, 41795898 - 41795744
Alignment:
| Q |
99 |
ttgtgcgtaaagaaattggtattgaatgtagaaatccttaataaattcagcaagtggttccctcttcaaaacttctgccggggtgccatcctcgttaagg |
198 |
Q |
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||||| ||||| |||||||||||| ||| || ||||| ||| |||||||||||||||||||||||||||| |||||| ||||| ||||| || | |||| |
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| T |
41795898 |
ttgtgtgtaaatcaattggtattgattgtggatatcctcaatcaattcagcaagtggttccctcttcaaaagttctgctggggtaccatcttcttcaagg |
41795799 |
T |
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| Q |
199 |
tcgtgatcattaacaaataagtttgattatcctttttactttgtcttcaatttctgtag |
257 |
Q |
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| T |
41795798 |
ttgtcatcttt----aataagtttcaatatccttttgactttgtcttcaatttctgtag |
41795744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 458 - 517
Target Start/End: Complemental strand, 41810603 - 41810544
Alignment:
| Q |
458 |
tgataacagatagttccttttctctttctttggactccatttcaagttctgaaacttggt |
517 |
Q |
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| T |
41810603 |
tgatagcagatagttcctcttctctttctttggacttcatttcaagttctgaaatttggt |
41810544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 458 - 518
Target Start/End: Complemental strand, 41796961 - 41796901
Alignment:
| Q |
458 |
tgataacagatagttccttttctctttctttggactccatttcaagttctgaaacttggtt |
518 |
Q |
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| T |
41796961 |
tgatagcagatagctcctcttctctttctttggacttcatttcaagttctgaaatttggtt |
41796901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 373 - 420
Target Start/End: Complemental strand, 41795615 - 41795568
Alignment:
| Q |
373 |
atagagattgtacctgctttagctccctggagctgcttttctttatca |
420 |
Q |
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| T |
41795615 |
atagagattgtacctgttttagctccctggagctgctcttctttatca |
41795568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 117 - 252
Target Start/End: Complemental strand, 37700920 - 37700790
Alignment:
| Q |
117 |
gtattgaatgtagaaatccttaataaattcagcaagtggttccctcttcaaaacttctgccggggtgccatcctcgttaaggtcgtgatcattaacaaat |
216 |
Q |
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||||||| ||| |||||||| ||||| | ||||||||||||||||||||||| |||||| ||||| ||||| || | ||||| || ||| || ||| |
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| T |
37700920 |
gtattgattgtggaaatcctcaataa-taaagcaagtggttccctcttcaaaatttctgctggggtaccatcgtcttcaaggttgtcatcttt----aat |
37700826 |
T |
|
| Q |
217 |
aagtttgattatcctttttactttgtcttcaatttc |
252 |
Q |
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|||||| | ||| ||||| ||||||||||||||||| |
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| T |
37700825 |
aagtttcaatattcttttcactttgtcttcaatttc |
37700790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 420
Target Start/End: Complemental strand, 41803319 - 41803273
Alignment:
| Q |
374 |
tagagattgtacctgctttagctccctggagctgcttttctttatca |
420 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
41803319 |
tagagattgtaccttttttacctccctggagctgcttttctttatca |
41803273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 420
Target Start/End: Complemental strand, 41810301 - 41810255
Alignment:
| Q |
374 |
tagagattgtacctgctttagctccctggagctgcttttctttatca |
420 |
Q |
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| T |
41810301 |
tagagattatacctgttttagctccctgaagctgcttttctttatca |
41810255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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