View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11723_low_9 (Length: 528)
Name: NF11723_low_9
Description: NF11723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11723_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-110; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 284 - 510
Target Start/End: Complemental strand, 10330421 - 10330196
Alignment:
| Q |
284 |
catcacctctcatactgctaaaaatattcttccaccaaatcgaatttgtgatgctctctctaaccacttccctaattagaagcccatgtttatgagccga |
383 |
Q |
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| T |
10330421 |
catcacctctcataattctaaaaatattcttccaccaaattgaatttgtgatgctctctctaaccacttccctaattagaagcccatgtttatgagccga |
10330322 |
T |
|
| Q |
384 |
aaggtgacaccaaaactcatctttctccctccttaacctccaacaccacttccttaaaagagccaaattaaaaacttgtaaactcccccaccttccttct |
483 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
10330321 |
aaggtgacaccaaaactcatctttctccctccttaacctccaacaccacttccttaaaagagccaaataaaaaacttgtaaact-ccccaccttccttct |
10330223 |
T |
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| Q |
484 |
ctttaggtaaacacactttgtctcaat |
510 |
Q |
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| T |
10330222 |
ctttaggtaaacacactttgtctcaat |
10330196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 10330514 - 10330419
Alignment:
| Q |
21 |
caataaaaccctacactccaccaattcaacctcacaaacaaacaaatttcttctccaaagctaacaagccccctcaacaccaatacctaactacat |
116 |
Q |
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| T |
10330514 |
caataaaaccctacactccaccaattcaacctcacaaacaaacaaatttcttctccaaagctaacaagccccctcaacaccaatacctaactacat |
10330419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 392 - 465
Target Start/End: Original strand, 35518280 - 35518353
Alignment:
| Q |
392 |
accaaaactcatctttctccctccttaacctccaacaccacttccttaaaagagccaaattaaaaacttgtaaa |
465 |
Q |
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| T |
35518280 |
accaaaatccatcattctccctccttaacatccaacaccacttccctaaaatatgtaaattaaaaacttttaaa |
35518353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 391 - 465
Target Start/End: Complemental strand, 53653679 - 53653605
Alignment:
| Q |
391 |
caccaaaactcatctttctccctccttaacctccaacaccacttccttaaaagagccaaattaaaaacttgtaaa |
465 |
Q |
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| T |
53653679 |
caccaaaactcacatttctccctctttaatctccaacaccacttatctaaaagagctaaattaaaaacttttaaa |
53653605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 438
Target Start/End: Complemental strand, 24781233 - 24781185
Alignment:
| Q |
390 |
acaccaaaactcatctttctccctccttaacctccaacaccacttcctt |
438 |
Q |
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| T |
24781233 |
acaccaaaactcatctttctcattccttaacctcttacaccacttcctt |
24781185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 24781448 - 24781379
Alignment:
| Q |
178 |
tttaccacctccccatctagccacgactcgtgtgaaaacaacgtcttactaccattttctattttattaa |
247 |
Q |
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| T |
24781448 |
tttaccacctccccacctagccacgactcatgccaggacaacgcttcactaccattttctattttcttaa |
24781379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 406 - 460
Target Start/End: Original strand, 13465995 - 13466049
Alignment:
| Q |
406 |
ttctccctccttaacctccaacaccacttccttaaaagagccaaattaaaaactt |
460 |
Q |
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| T |
13465995 |
ttctcactctttaacctccaacaccacttccctaaaatggctaaattaaaaactt |
13466049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 294
Target Start/End: Original strand, 28827249 - 28827358
Alignment:
| Q |
185 |
cctccccatctagccacgactcgtgtgaaaacaacgtcttactaccattttctattttattaataacattatacacaaatcatctccctccacttatctc |
284 |
Q |
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| T |
28827249 |
cctcctcatctaacaacgacacgtgccaaaacaaagtattagtacaatttcctattttcttagtaacattatccaaaaaccatctccctccattcacctc |
28827348 |
T |
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| Q |
285 |
atcacctctc |
294 |
Q |
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||||||||| |
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| T |
28827349 |
gtcacctctc |
28827358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 510
Target Start/End: Complemental strand, 44632488 - 44632459
Alignment:
| Q |
481 |
tctctttaggtaaacacactttgtctcaat |
510 |
Q |
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| T |
44632488 |
tctctttaggtaaacacactttgtctcaat |
44632459 |
T |
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