View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11724_high_11 (Length: 324)
Name: NF11724_high_11
Description: NF11724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11724_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 11228457 - 11228162
Alignment:
| Q |
19 |
tatcccctagtgtactcctcacccatttgattccagcagcatagtcaaactcaaaatgtttctaaaaatgtatttaaaggtcaatattttgatataaaag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11228457 |
tatcccctagtgtactcctcacccatttgattccagcagcatagtcaaactcaaaatgtttctaaaaatgtatttaaaggtcaatattttgatataaaag |
11228358 |
T |
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| Q |
119 |
gcacatcaacaaacnnnnnnnnnttaacaaagtcaaaataataacctcaatacactgccattgatctatactacatttttcggacatctcatcccacctt |
218 |
Q |
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| T |
11228357 |
gcacatcaacaaacaaacaaaaattaacaaagtcaaaataataacctcgatacactgccattgatctatactacatttttcggacatctcatcccacctt |
11228258 |
T |
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| Q |
219 |
tcaactgatataggacaataggctgactttttagcgatttggcctaagaacctcacaagtaagttagtaccattatcgtctccttgtccccctttg |
314 |
Q |
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|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11228257 |
tcaactgatataggacaataggctgattttttagcaatttggcctaagaacctcacaagtaagttagtaccattatcgtctccttgtccccttttg |
11228162 |
T |
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Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 13551979 - 13551685
Alignment:
| Q |
19 |
tatcccctagtgtactcctcacccatttgattccagcagcatagtcaaactcaaaatgtttctaaaaatgtatttaaaggtcaatattttgatataaaag |
118 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
13551979 |
tatccgctagtgtactcctcacccatttgattccagcagcatagtcaaactcaaaatgtttctagaaatgtatttaaaggtcaatattttgatataaaaa |
13551880 |
T |
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| Q |
119 |
gcacatcaacaaacnnnnnnnnnttaacaaagtcaaaataataacctcaatacactgccattgatctatactacatttttcggacatctcatcccacctt |
218 |
Q |
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|| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
13551879 |
gcgcatcaacaaacaaaaaaaa-ttaacaaagtcaaaatataaacctcaatacactgccattgatctatactacatttttcggacatctcatcccatctt |
13551781 |
T |
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| Q |
219 |
tcaactgatataggacaataggctgactttttagcgatttggcctaagaacctcacaagtaagttagtaccattatcgtctccttgtccccctttg |
314 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
13551780 |
tcaactgatataggacaatagactgactttttagcgatttggcctaagaacctcacaagtaagtttgtaccattatcgtctccttgtccccttttg |
13551685 |
T |
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