View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11724_high_9 (Length: 383)
Name: NF11724_high_9
Description: NF11724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11724_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 6359889 - 6359528
Alignment:
| Q |
1 |
gaagaacacgtagaacgagtggttgagacagcgtatttatgttcaccataagaagaagggtaattgaagagagaattgagaatgggatctgaaggggatg |
100 |
Q |
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| T |
6359889 |
gaagaacacgtagaacgagtggttgagacagcgtatttatgttcaccataagaagaagggtaattgaagagagaattgagaatgggatctgaaggggatg |
6359790 |
T |
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| Q |
101 |
atctgaagaagcatttggattgggagagggtggtgtaaagagcaagaaaaagagtggtgaagagatagaaaagtgaaaaacagaggagttttgatttgag |
200 |
Q |
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| T |
6359789 |
atctgaagaagcatttggattgggagagggtggtgtaaagagcaagaaaaagagtggtgaagagatagaaaagtgaaaaacagaggagttttgatttgag |
6359690 |
T |
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| Q |
201 |
aatgagaggtttggaagttgttattagcttccccataggtggtggaataatnnnnnnngtgattatttttggggatttgtgtgacatggatttggttggg |
300 |
Q |
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| T |
6359689 |
aatgagaggtttggaagttgttattagcttccccatag---gtggaataat-aaaaaagtgattatttttggggatttgtgtgacatggatttggttggg |
6359594 |
T |
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| Q |
301 |
attttacttttgtgaagtggagaatgggattttgattgatcatgtgttggttgctgaatgacccac |
366 |
Q |
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| T |
6359593 |
attttacttttgtgaagtggagaatgggattttgattgatcatgtgttggttgttgaatgacccac |
6359528 |
T |
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