View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11724_low_1 (Length: 864)
Name: NF11724_low_1
Description: NF11724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11724_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 580; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 19 - 668
Target Start/End: Original strand, 4570889 - 4571542
Alignment:
| Q |
19 |
caaagggagaaaacatgtctaactatacaagctttt--atttcccaacaaagaaaaacatttccacacaacaaaagtttatgtcaagagcaaataaataa |
116 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4570889 |
caaaaggagaaaacatgtctaactatacaagcttttttatttcccaacaaagaaaaacatttccacacaacaaaagtttatgtcaagagcaaataaataa |
4570988 |
T |
|
| Q |
117 |
acaattgaaattaaatagactatgcaaggttcatgaatattacagaaatggaccgcatgcagtcaatagttcttgcagttgtaatcttagtcgtatgttt |
216 |
Q |
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|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4570989 |
acaattgaaattaaatagactacgcaaggtccatgaatattacagaaatggaccgcatgcagtcaatagttcttgcagttgtaatcttagtcgtatgttt |
4571088 |
T |
|
| Q |
217 |
aagaccggagatgattgtgaattcaagttgtattgtcaatcaaattgttgaagttaaaacacaaacattctaatctctatctatcgatcaatgtttacca |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
4571089 |
aagaccggagatgattgtgaattcaagttgtattgtcaatcaaattgttgaagttaaaacacaaacattctgatctctatctatcgatcaacgtttacca |
4571188 |
T |
|
| Q |
317 |
actatagtga--ctgcagtcaatcaggatccgaatattagtatattaccttcaaggagacctctaaataggtcatcaacagcagatgaaagtttttcata |
414 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4571189 |
actatagtgagactgcagtcaatcaggatccgaatattagtatattaccttcaaggagacctctaaataggtcatcaacagcagatgaaagtttttcata |
4571288 |
T |
|
| Q |
415 |
gctatcataagcattgatgtctatttttctcccaataggaactccatccatattgatcttcacaaacaagcctttaccagagttgctaataggtttgtta |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4571289 |
gctatcataagcattgatgtctatttttctcccaataggaactccatccatattgatcttcacaaacaagcctttaccagagttgctaataggtttgtta |
4571388 |
T |
|
| Q |
515 |
ctatcaacaataaccttgtcttgaaccattggccgggactcagttggcagcttagaagagcttccacttgcaatgttcttcctaaaagatcgaattggag |
614 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| || || || |||||||||| |
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| T |
4571389 |
ctatcaacaataaccttgtcttgaaccattggtcgggactcagttggcggcttagaagagcttccacttgcaatgttctttctgaatgaacgaattggag |
4571488 |
T |
|
| Q |
615 |
gccatcctactactggactagcagcatttctgttttagttggatcatcataatg |
668 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4571489 |
gccaacctactaccggactagcagcatttctgttttagttggatcatcataatg |
4571542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 744 - 849
Target Start/End: Original strand, 4571618 - 4571723
Alignment:
| Q |
744 |
tatctgcaaccacaattacggccacaacgttaaggttttgttatctatgtgacttcaattgtggttatatcaacaatacatcaattcacagtttgactgt |
843 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||| |
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| T |
4571618 |
tatctgcaaccacaattacggccacaacgtttaggttttgttatctatgtgacttcaattgtggttttatcaacaatacatttattcacagttagactgt |
4571717 |
T |
|
| Q |
844 |
aatatc |
849 |
Q |
| |
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|||||| |
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|
| T |
4571718 |
aatatc |
4571723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 360 - 499
Target Start/End: Original strand, 43338046 - 43338185
Alignment:
| Q |
360 |
taccttcaaggagacctctaaataggtcatcaacagcagatgaaagtttttcatagctatcataagcattgatgtctatttttctcccaataggaactcc |
459 |
Q |
| |
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|||||| |||||| |||||||| |||||||| ||||| || ||||| || |||||||||| ||||||||||| || | |||||| ||||| ||||| || |
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| T |
43338046 |
tacctttaaggagtcctctaaagaggtcatccacagctgaagaaagattatcatagctatgataagcattgagatcaacttttctaccaattggaacacc |
43338145 |
T |
|
| Q |
460 |
atccatattgatcttcacaaacaagcctttaccagagttg |
499 |
Q |
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|||||| |||||||| |||||||| ||||||||| ||||| |
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| T |
43338146 |
atccatgttgatcttaacaaacaaacctttaccatagttg |
43338185 |
T |
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Back To:
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