View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11724_low_10 (Length: 422)

Name: NF11724_low_10
Description: NF11724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11724_low_10
NF11724_low_10
[»] chr3 (5 HSPs)
chr3 (155-277)||(51830115-51830236)
chr3 (87-142)||(14997428-14997482)
chr3 (153-199)||(42277296-42277341)
chr3 (78-139)||(48537841-48537902)
chr3 (91-135)||(52042117-52042162)
[»] chr1 (6 HSPs)
chr1 (1-88)||(26104479-26104566)
chr1 (154-277)||(37183210-37183332)
chr1 (154-277)||(42097394-42097517)
chr1 (91-142)||(21749287-21749339)
chr1 (91-142)||(43403296-43403349)
chr1 (153-253)||(37182137-37182237)
[»] chr6 (3 HSPs)
chr6 (154-215)||(26545792-26545853)
chr6 (89-142)||(26545868-26545922)
chr6 (91-142)||(12603939-12603991)
[»] chr7 (4 HSPs)
chr7 (76-140)||(23455343-23455407)
chr7 (98-139)||(91947-91989)
chr7 (153-191)||(19628129-19628167)
chr7 (153-191)||(23456627-23456665)
[»] chr5 (1 HSPs)
chr5 (153-249)||(6376921-6377017)
[»] chr4 (6 HSPs)
chr4 (153-215)||(16314126-16314188)
chr4 (153-203)||(20673629-20673679)
chr4 (153-191)||(23506332-23506370)
chr4 (154-191)||(13421898-13421935)
chr4 (158-215)||(52706721-52706777)
chr4 (92-143)||(47861936-47861988)
[»] chr8 (1 HSPs)
chr8 (91-142)||(14101088-14101141)


Alignment Details
Target: chr3 (Bit Score: 91; Significance: 6e-44; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 155 - 277
Target Start/End: Original strand, 51830115 - 51830236
Alignment:
Q  155 tggagattcccccttgtaatttaaagattatttggttaacacccccaagcccatctgactgtacaaagaagatgatttggcgtgctgaccgggtaaaaat 254  Q
    |||||||| |||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51830115 tggagatttccccttgtaatttaaagattctttggttaacaccccaaa-cccatctgactgtacaaagaagatgatttggcgtgctgaccgggtaaaaat 51830213  T
Q  255 gcatagttggcacactgagttgg 277  Q
    ||||| ||| ||| |||||||||    
T  51830214 gcataattgacacgctgagttgg 51830236  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 142
Target Start/End: Complemental strand, 14997482 - 14997428
Alignment:
Q  87 tagagttaataggcttttatcccct-gtcatatggcgtcttttggtttaccccccta 142  Q
    ||||||||||||||||||| ||||| ||||||  |||||||||||||||||||||||    
T  14997482 tagagttaataggcttttacccccttgtcata--gcgtcttttggtttaccccccta 14997428  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 42277296 - 42277341
Alignment:
Q  153 cttggagattcccccttgtaatttaaagattatttggttaacacccc 199  Q
    ||||||||| ||||||||||||||||||||| ||||||| |||||||    
T  42277296 cttggagat-cccccttgtaatttaaagattctttggtttacacccc 42277341  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 139
Target Start/End: Original strand, 48537841 - 48537902
Alignment:
Q  78 tattgaaaatagagttaataggcttttatcccctgtcatat-ggcgtcttttggtttaccccc 139  Q
    |||||||||||| ||||||||||||||| |||||| ||| | || ||||||||||||||||||    
T  48537841 tattgaaaatagggttaataggctttta-cccctgccatttgggggtcttttggtttaccccc 48537902  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 52042117 - 52042162
Alignment:
Q  91 gttaataggcttttatcccctgtcatat-ggcgtcttttggtttac 135  Q
    ||||||||||||||| |||||||||||| || ||||||||||||||    
T  52042117 gttaataggcttttaccccctgtcatatgggtgtcttttggtttac 52042162  T

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Target: chr1 (Bit Score: 88; Significance: 4e-42; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 26104479 - 26104566
Alignment:
Q  1 gtgtcacattatctacctcaagttgtcattatcaagcttaatgacttaaaaatggtttgaaaggatctattaagttatattgaaaata 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26104479 gtgtcacattatctacctcaagttgtcattatcaagcttaatgacttaaaaatggtttgaaaggatctattaagttatattgaaaata 26104566  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 154 - 277
Target Start/End: Complemental strand, 37183332 - 37183210
Alignment:
Q  154 ttggagattcccccttgtaatttaaagattatttggttaacacccccaagcccatctgactgtacaaagaagatgatttggcgtgctgaccgggtaaaaa 253  Q
    |||||||||  ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||  |||||||||    
T  37183332 ttggagattttcccttgtaatttaaatattctttggttaacacccccaagcccatctgactgtacaaagaagatgatttgacgtg-tgattgggtaaaaa 37183234  T
Q  254 tgcatagttggcacactgagttgg 277  Q
    |||| ||||||||| |||||||||    
T  37183233 tgcaaagttggcacgctgagttgg 37183210  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 154 - 277
Target Start/End: Original strand, 42097394 - 42097517
Alignment:
Q  154 ttggagattcccccttgtaatttaaagattatttgg-ttaacacccccaagcccatctgactgtacaaagaagatgatttggcgtgctgaccgggtaaaa 252  Q
    |||||||||||||||||||||||||||||| ||||| || | |||| ||| ||||||||||||| || | | | |||  |||| ||||||| ||  ||||    
T  42097394 ttggagattcccccttgtaatttaaagattctttggttttagaccctcaa-cccatctgactgtgcagaaacgctgacgtggcatgctgactggaaaaaa 42097492  T
Q  253 atgcatagttggcacactgagttgg 277  Q
     |||||| ||||||| |||||||||    
T  42097493 ttgcatatttggcacgctgagttgg 42097517  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 142
Target Start/End: Complemental strand, 21749339 - 21749287
Alignment:
Q  91 gttaataggcttttatcccctgtcatatg-gcgtcttttggtttaccccccta 142  Q
    ||||||||||||||| |||||  |||||| |||||||||||||||||||||||    
T  21749339 gttaataggcttttaccccctaccatatgtgcgtcttttggtttaccccccta 21749287  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 142
Target Start/End: Complemental strand, 43403349 - 43403296
Alignment:
Q  91 gttaataggcttttatcccc-tgtcatatggcg-tcttttggtttaccccccta 142  Q
    |||||||||||||||||||| |||||| ||| | ||||||||||||||||||||    
T  43403349 gttaataggcttttatccccctgtcatttgggggtcttttggtttaccccccta 43403296  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 253
Target Start/End: Original strand, 37182137 - 37182237
Alignment:
Q  153 cttggagattcccccttgtaatttaaagattatttggttaacacccccaagcccatctgactgtacaaagaagatgatttggcgtgctgaccgggtaaaa 252  Q
    |||| |||||| ||||||| |||  ||||||||||||| ||||||||| |  |||| ||||||| |||| | | |||| ||||||| |||| | ||||||    
T  37182137 cttgtagattctcccttgtcattagaagattatttggtcaacaccccccaaaccatatgactgtgcaaatatgttgatgtggcgtggtgactgtgtaaaa 37182236  T
Q  253 a 253  Q
    |    
T  37182237 a 37182237  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 26545853 - 26545792
Alignment:
Q  154 ttggagattcccccttgtaatttaaagattatttggttaacacccccaagcccatctgactg 215  Q
    ||||||||||||||||||||  |||||||| ||||||| ||||||| ||| |||||||||||    
T  26545853 ttggagattcccccttgtaaaataaagattctttggtttacacccctaaggccatctgactg 26545792  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 26545922 - 26545868
Alignment:
Q  89 gagttaataggcttttatcccctgtcatatg-gcgtcttttggtttaccccccta 142  Q
    ||||||||||||||||| |||||| ||| || | |||||||||||||||||||||    
T  26545922 gagttaataggcttttaccccctgccatttgagggtcttttggtttaccccccta 26545868  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 142
Target Start/End: Original strand, 12603939 - 12603991
Alignment:
Q  91 gttaataggcttttatcccctgtcatatggc-gtcttttggtttaccccccta 142  Q
    ||||||||||||||| |||||| ||| |||  |||||||||||||||||||||    
T  12603939 gttaataggcttttaccccctgccatttgggagtcttttggtttaccccccta 12603991  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 23455343 - 23455407
Alignment:
Q  76 tatattgaaaatagagttaataggcttttatcccctgtcatatg-gcgtcttttggtttacccccc 140  Q
    |||||||||||||| ||||||||||||||| |||||| |||||| |||| ||||||| ||||||||    
T  23455343 tatattgaaaatagggttaataggctttta-cccctgccatatgagcgtattttggtatacccccc 23455407  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 91947 - 91989
Alignment:
Q  98 ggcttttatcccctgtcatatgg-cgtcttttggtttaccccc 139  Q
    |||||||| |||||||||||||| |||||||||||||||||||    
T  91947 ggcttttaccccctgtcatatgggcgtcttttggtttaccccc 91989  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 191
Target Start/End: Complemental strand, 19628167 - 19628129
Alignment:
Q  153 cttggagattcccccttgtaatttaaagattatttggtt 191  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  19628167 cttggagattcccccttgtaaaataaagattatttggtt 19628129  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 191
Target Start/End: Complemental strand, 23456665 - 23456627
Alignment:
Q  153 cttggagattcccccttgtaatttaaagattatttggtt 191  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  23456665 cttggagattcccccttgtcatttaaagattctttggtt 23456627  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 249
Target Start/End: Complemental strand, 6377017 - 6376921
Alignment:
Q  153 cttggagattcccccttgtaatttaaagattatttggttaacacccccaagcccatctgactgtacaaagaagatgatttggcgtgctgaccgggta 249  Q
    ||||||||||||| ||||||||||||||||| ||||||| ||  ||| ||| |||| |||||| | |||   |||||| |||| ||||||| |||||    
T  6377017 cttggagattccctcttgtaatttaaagattctttggtttacctccctaagaccatatgactggataaatgggatgatgtggcttgctgacggggta 6376921  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 16314188 - 16314126
Alignment:
Q  153 cttggagattcccccttgtaatttaaagattatttggttaacacccccaagcccatctgactg 215  Q
    |||||||||||||||||||||  |||||||| ||||||| || |||| |||  ||||||||||    
T  16314188 cttggagattcccccttgtaaaataaagattctttggttcacccccctaaggtcatctgactg 16314126  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 20673629 - 20673679
Alignment:
Q  153 cttggagattcccccttgtaatttaaagattatttggttaacacccccaag 203  Q
    ||||||||||||||| ||||||||||||||| |||| || |||||| ||||    
T  20673629 cttggagattcccccctgtaatttaaagattctttgctttacaccctcaag 20673679  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 191
Target Start/End: Complemental strand, 23506370 - 23506332
Alignment:
Q  153 cttggagattcccccttgtaatttaaagattatttggtt 191  Q
    ||||||||||||||||||||||||| ||||| |||||||    
T  23506370 cttggagattcccccttgtaatttatagattctttggtt 23506332  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 13421935 - 13421898
Alignment:
Q  154 ttggagattcccccttgtaatttaaagattatttggtt 191  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  13421935 ttggagatccccccttgtaatttaaagattctttggtt 13421898  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 215
Target Start/End: Complemental strand, 52706777 - 52706721
Alignment:
Q  158 agattcccccttgtaatttaaagattatttggttaacacccccaagcccatctgactg 215  Q
    ||||||||||||| ||| | |||||||||||||| ||||| ||||| |||||||||||    
T  52706777 agattcccccttgaaatatcaagattatttggtttacacctccaag-ccatctgactg 52706721  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 143
Target Start/End: Original strand, 47861936 - 47861988
Alignment:
Q  92 ttaataggcttttatcccctgtcatatggcg-tcttttggtttacccccctac 143  Q
    |||||||||||||| |||||| ||| ||| | |||||||||||||||||||||    
T  47861936 ttaataggcttttaccccctgccatttgggggtcttttggtttacccccctac 47861988  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 142
Target Start/End: Complemental strand, 14101141 - 14101088
Alignment:
Q  91 gttaataggcttttatcccc-tgtcatatg-gcgtcttttggtttaccccccta 142  Q
    ||||||||||||||| |||| || |||||| |||||||||||||||||||||||    
T  14101141 gttaataggcttttacccccctgccatatgagcgtcttttggtttaccccccta 14101088  T

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