View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11724_low_12 (Length: 360)
Name: NF11724_low_12
Description: NF11724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11724_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 2 - 318
Target Start/End: Complemental strand, 34676097 - 34675781
Alignment:
| Q |
2 |
agagtagatatggtaacaaagtaggta----tagtggtggtgttagttagttagttggttaagtgtgggagaagggaggtaatgaattatgaaaagcaaa |
97 |
Q |
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| T |
34676097 |
agagtagatatggtaacaaagtaggtaggtatagtggtggtgttagttagtt----ggttaagtgtgggagaagggaggtaatgaattatgaaaagcaaa |
34676002 |
T |
|
| Q |
98 |
gaattttttgcttaattagctaatacattatgatgaaattaaggaattattttttgaggtatgatatgatgtaaagtaagtcaaataagtttgttgtgac |
197 |
Q |
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| T |
34676001 |
gaattttttgcttaattagctaatacattataatgaaattaaggaattattttttgaggtatgatatgatgtaaagtaagtcaaataagtttgttgtgac |
34675902 |
T |
|
| Q |
198 |
atgtttgttgggtatgtctttgtttctaattataatatgttggtggttatggttaaacggattgagctagcttacattggtttctttatccttcatgggt |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34675901 |
atgtttgttgggtatgtctttgtttctaattataatatgtttgtggttatggttaaacggattgagctagcttacattggtttctttatccttcatgggt |
34675802 |
T |
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| Q |
298 |
ccactattattggagtggtcc |
318 |
Q |
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||||||||||||||||||||| |
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| T |
34675801 |
ccactattattggagtggtcc |
34675781 |
T |
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